Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01710

Experiment: PYE with Chloramphenicol 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Chloramphenicol 0.0005 mg/ml
1,840,099	+				+0.5
1,840,168	+		CCNA_01708	0.11	-1.1
1,840,198	-		CCNA_01708	0.16	+0.9
1,840,199	-		CCNA_01708	0.16	+0.3
1,840,240	+		CCNA_01708	0.24	-0.9
1,840,245	+		CCNA_01708	0.24	+2.8
1,840,245	+		CCNA_01708	0.24	+0.1
1,840,334	-		CCNA_01708	0.41	+0.4
1,840,334	-		CCNA_01708	0.41	-0.2
1,840,358	+		CCNA_01708	0.45	-1.5
1,840,403	+		CCNA_01708	0.53	-1.6
1,840,404	+		CCNA_01708	0.53	-0.8
1,840,432	+		CCNA_01708	0.58	-0.3
1,840,437	+		CCNA_01708	0.59	-0.9
1,840,440	-		CCNA_01708	0.60	+0.1
1,840,497	+		CCNA_01708	0.70	-2.3
1,840,513	-		CCNA_01708	0.73	+1.9
1,840,523	-		CCNA_01708	0.75	-1.7
1,840,540	+		CCNA_01708	0.78	-0.9
1,840,548	-				+1.9
1,840,613	+				-1.5
1,840,613	+				+0.1
1,840,614	+				-0.5
1,840,662	-				-1.7
1,840,664	-				-1.8
1,840,664	-				+2.6
1,840,695	-				-1.1
1,840,718	+				-0.9
1,840,743	+				-0.7
1,840,743	+				-1.0
1,840,743	-				+0.1
1,840,743	-				+0.2
1,840,763	-				-0.4
1,840,768	-				+0.6
1,840,785	+		CCNA_01709	0.12	+0.2
1,840,853	+		CCNA_01709	0.33	-2.8
1,840,922	+		CCNA_01709	0.54	-2.8
1,840,965	+		CCNA_01709	0.67	+1.0
1,840,993	+		CCNA_01709	0.75	-1.9
1,841,000	+		CCNA_01709	0.77	-2.0
1,841,001	-		CCNA_01709	0.78	-0.2
1,841,001	-		CCNA_01709	0.78	-2.4
1,841,104	-				+2.9
1,841,135	-				+0.0
1,841,188	-				-0.2
1,841,189	+				-0.6
1,841,197	-				-1.2
1,841,230	+		CCNA_01710	0.10	+0.7
1,841,238	-		CCNA_01710	0.11	-0.7
1,841,238	-		CCNA_01710	0.11	-0.8
1,841,247	+		CCNA_01710	0.11	-1.4
1,841,275	-		CCNA_01710	0.13	+1.4
1,841,297	-		CCNA_01710	0.14	+1.3
1,841,299	+		CCNA_01710	0.15	+0.2
1,841,371	+		CCNA_01710	0.19	-0.6
1,841,371	+		CCNA_01710	0.19	-1.3
1,841,379	-		CCNA_01710	0.20	+0.3
1,841,394	-		CCNA_01710	0.21	-1.4
1,841,437	+		CCNA_01710	0.24	+0.4
1,841,445	-		CCNA_01710	0.24	+0.5
1,841,521	+		CCNA_01710	0.29	+0.6
1,841,533	+		CCNA_01710	0.30	-1.5
1,841,540	+		CCNA_01710	0.30	-0.2
1,841,547	-		CCNA_01710	0.31	+0.0
1,841,547	-		CCNA_01710	0.31	-1.0
1,841,549	+		CCNA_01710	0.31	+0.2
1,841,620	+		CCNA_01710	0.35	-0.5
1,841,629	+		CCNA_01710	0.36	+0.9
1,841,673	-		CCNA_01710	0.39	+0.1
1,841,706	-		CCNA_01710	0.41	-0.4
1,841,706	-		CCNA_01710	0.41	+1.1
1,841,720	+		CCNA_01710	0.42	-0.7
1,841,728	-		CCNA_01710	0.43	-1.0
1,841,768	+		CCNA_01710	0.45	+1.3
1,841,776	-		CCNA_01710	0.46	-1.2
1,841,778	+		CCNA_01710	0.46	-1.4
1,841,794	+		CCNA_01710	0.47	-0.3
1,841,902	+		CCNA_01710	0.54	-0.0
1,841,902	+		CCNA_01710	0.54	-1.5
1,841,904	-		CCNA_01710	0.54	-1.3
1,841,909	-		CCNA_01710	0.54	-1.0
1,841,915	+		CCNA_01710	0.55	-1.5
1,841,915	+		CCNA_01710	0.55	+1.3
1,841,915	+		CCNA_01710	0.55	-0.8
1,841,961	-		CCNA_01710	0.58	+1.3
1,842,001	+		CCNA_01710	0.60	+1.1
1,842,015	-		CCNA_01710	0.61	+0.0
1,842,053	+		CCNA_01710	0.64	+0.0
1,842,154	+		CCNA_01710	0.70	-1.8
1,842,179	+		CCNA_01710	0.72	+1.6
1,842,187	-		CCNA_01710	0.73	-2.2
1,842,221	+		CCNA_01710	0.75	+2.2
1,842,229	-		CCNA_01710	0.75	+1.1
1,842,267	-		CCNA_01710	0.78	-0.8
1,842,304	-		CCNA_01710	0.80	+0.4
1,842,306	-		CCNA_01710	0.80	-1.1
1,842,381	-		CCNA_01710	0.85	-1.3
1,842,418	+		CCNA_01710	0.88	-1.4
1,842,425	+		CCNA_01710	0.88	-0.3
1,842,426	-		CCNA_01710	0.88	+0.6
1,842,432	-		CCNA_01710	0.89	-0.6
1,842,506	+				+0.0
1,842,514	-				-0.3
1,842,516	+				-1.1
1,842,516	+				+0.3
1,842,516	+				+0.2
1,842,516	+				-1.2
1,842,524	-				+1.2
1,842,524	-				-1.3
1,842,524	-				-1.5
1,842,534	-				-0.3
1,842,534	-				+1.1
1,842,640	-				-1.3
1,842,662	+				+0.4
1,842,662	+				-0.7
1,842,662	+				+1.3
1,842,664	-				+1.4
1,842,670	-				-2.9
1,842,736	-				+0.7
1,842,756	+				-0.6
1,842,764	-				+1.6
1,842,891	+				-0.3
1,842,891	+				-0.2
1,842,899	-				-2.7
1,842,899	-				+0.1
1,842,899	-				-1.7
1,842,904	-				+0.4
1,842,911	+				-1.0
1,842,916	+				+1.6
1,842,921	+				-1.6
1,842,921	+				-1.4
1,842,942	+		CCNA_01711	0.11	-1.7
1,842,998	-		CCNA_01711	0.15	+0.0
1,843,017	+		CCNA_01711	0.16	-0.2
1,843,051	+		CCNA_01711	0.18	-0.3
1,843,051	+		CCNA_01711	0.18	-0.6
1,843,059	-		CCNA_01711	0.19	+0.8
1,843,064	-		CCNA_01711	0.19	+0.7
1,843,089	+		CCNA_01711	0.21	+1.3
1,843,134	-		CCNA_01711	0.24	+0.9
1,843,134	-		CCNA_01711	0.24	-0.7
1,843,134	-		CCNA_01711	0.24	-0.7
1,843,158	-		CCNA_01711	0.26	+0.6
1,843,160	+		CCNA_01711	0.26	+0.9
1,843,194	-		CCNA_01711	0.28	+0.7
1,843,195	-		CCNA_01711	0.28	+0.1
1,843,214	+		CCNA_01711	0.29	-1.2
1,843,227	+		CCNA_01711	0.30	+0.6
1,843,227	+		CCNA_01711	0.30	+1.0
1,843,233	-		CCNA_01711	0.31	-2.1
1,843,298	+		CCNA_01711	0.35	-1.0
1,843,298	+		CCNA_01711	0.35	+2.0
1,843,306	+		CCNA_01711	0.36	-0.8
1,843,336	+		CCNA_01711	0.38	-0.8
1,843,336	+		CCNA_01711	0.38	+0.5
1,843,344	-		CCNA_01711	0.38	-0.5
1,843,361	+		CCNA_01711	0.39	-1.4
1,843,384	+		CCNA_01711	0.41	+0.1
1,843,392	-		CCNA_01711	0.41	+0.8
1,843,392	-		CCNA_01711	0.41	+0.8
1,843,392	-		CCNA_01711	0.41	-2.1
1,843,435	-		CCNA_01711	0.44	+2.9
1,843,468	+		CCNA_01711	0.47	-0.8
1,843,505	+		CCNA_01711	0.49	-1.0
1,843,542	+		CCNA_01711	0.52	-1.4
1,843,543	+		CCNA_01711	0.52	-2.4
1,843,543	+		CCNA_01711	0.52	-0.8
1,843,543	+		CCNA_01711	0.52	-1.1
1,843,551	-		CCNA_01711	0.52	+0.4
1,843,551	-		CCNA_01711	0.52	-1.2
1,843,551	-		CCNA_01711	0.52	+2.2
1,843,565	-		CCNA_01711	0.53	-0.3