Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01572

Experiment: PYE with Chloramphenicol 0.0005 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE with Chloramphenicol 0.0005 mg/ml
1,688,176	-		CCNA_01570	0.70	+0.3
1,688,309	-				+0.8
1,688,309	-		CCNA_01570	0.79	-0.8
1,688,356	-		CCNA_01570	0.82	+1.1
1,688,415	+		CCNA_01570	0.85	+1.9
1,688,481	-		CCNA_01570	0.90	-0.2
1,688,485	+		CCNA_01570	0.90	-1.0
1,688,521	-				+0.6
1,688,558	+				-0.6
1,688,562	+				+1.3
1,688,575	-				-1.8
1,688,577	+				+0.1
1,688,580	-				-0.6
1,688,581	-				-0.9
1,688,647	+				-2.7
1,688,727	+		CCNA_01571	0.10	+1.0
1,688,735	-		CCNA_01571	0.12	+0.7
1,688,755	+		CCNA_01571	0.17	-0.2
1,688,776	-		CCNA_01571	0.22	-0.9
1,688,781	-		CCNA_01571	0.23	-0.9
1,688,835	+		CCNA_01571	0.36	+0.6
1,688,883	-		CCNA_01571	0.48	+0.7
1,688,900	-		CCNA_01571	0.52	-1.0
1,689,033	+		CCNA_01571	0.84	-0.5
1,689,096	+				-0.4
1,689,110	+				+0.3
1,689,221	-		CCNA_01572	0.19	+1.6
1,689,283	+		CCNA_01572	0.28	-0.7
1,689,294	-		CCNA_01572	0.30	+0.7
1,689,342	+		CCNA_01572	0.37	-1.6
1,689,355	-		CCNA_01572	0.39	+1.6
1,689,385	+		CCNA_01572	0.43	+1.2
1,689,385	+		CCNA_01572	0.43	-0.3
1,689,388	-		CCNA_01572	0.44	+1.5
1,689,393	-		CCNA_01572	0.44	-1.2
1,689,414	-		CCNA_01572	0.47	+0.7
1,689,436	+		CCNA_01572	0.51	-1.0
1,689,448	-		CCNA_01572	0.52	-1.2
1,689,453	-		CCNA_01572	0.53	-0.4
1,689,453	-		CCNA_01572	0.53	+0.8
1,689,463	-		CCNA_01572	0.55	-1.7
1,689,494	+		CCNA_01572	0.59	+0.8
1,689,499	+		CCNA_01572	0.60	+1.1
1,689,499	+		CCNA_01572	0.60	-1.5
1,689,502	-		CCNA_01572	0.60	-0.3
1,689,502	-		CCNA_01572	0.60	+0.2
1,689,512	+		CCNA_01572	0.62	+0.5
1,689,518	-		CCNA_01572	0.63	-0.3
1,689,530	-		CCNA_01572	0.65	-1.0
1,689,530	-		CCNA_01572	0.65	-1.3
1,689,604	+		CCNA_01572	0.76	+0.7
1,689,604	+		CCNA_01572	0.76	-1.3
1,689,612	-		CCNA_01572	0.77	-1.4
1,689,612	-		CCNA_01572	0.77	-0.2
1,689,622	+		CCNA_01572	0.78	+2.0
1,689,622	+		CCNA_01572	0.78	+2.3
1,689,629	+		CCNA_01572	0.79	-1.0
1,689,635	-		CCNA_01572	0.80	-0.1
1,689,684	+		CCNA_01572	0.87	-0.9
1,689,721	+				-0.6
1,689,721	+				-0.3
1,689,794	-				+0.7
1,689,808	+		CCNA_01573	0.12	+0.1
1,689,816	-		CCNA_01573	0.14	+0.3
1,689,816	-		CCNA_01573	0.14	+2.6
1,689,816	-		CCNA_01573	0.14	-0.2
1,689,833	-		CCNA_01573	0.19	+0.8
1,689,844	+		CCNA_01573	0.22	-0.2
1,689,885	-		CCNA_01573	0.34	+1.5
1,689,896	-		CCNA_01573	0.37	+0.3
1,689,896	-		CCNA_01573	0.37	+1.4
1,689,933	+		CCNA_01573	0.47	+0.0
1,689,938	+		CCNA_01573	0.49	-0.7
1,689,941	-		CCNA_01573	0.50	+1.5
1,689,943	+		CCNA_01573	0.50	+0.5
1,689,946	-		CCNA_01573	0.51	+1.4
1,689,946	-		CCNA_01573	0.51	+1.1
1,689,951	-		CCNA_01573	0.53	+0.9
1,689,984	-		CCNA_01573	0.62	+1.5
1,689,984	-		CCNA_01573	0.62	+0.7
1,689,999	-		CCNA_01573	0.66	+0.3
1,690,013	-		CCNA_01573	0.70	+1.8
1,690,018	-		CCNA_01573	0.71	+2.7
1,690,038	-		CCNA_01573	0.77	+1.6
1,690,070	+		CCNA_01573	0.86	+0.9
1,690,077	+		CCNA_01573	0.88	-1.4
1,690,077	+		CCNA_01573	0.88	+2.3
1,690,100	-				+0.9
1,690,262	+		CCNA_01574	0.12	-2.1
1,690,277	+		CCNA_01574	0.14	-0.2
1,690,341	-		CCNA_01574	0.23	-0.5
1,690,344	+		CCNA_01574	0.23	-1.7
1,690,366	+		CCNA_01574	0.26	-1.5
1,690,374	-		CCNA_01574	0.27	+1.1
1,690,405	+		CCNA_01574	0.32	-1.4
1,690,413	-		CCNA_01574	0.33	-2.2
1,690,415	+		CCNA_01574	0.33	+0.2
1,690,422	+		CCNA_01574	0.34	-0.8
1,690,442	+		CCNA_01574	0.37	+1.2
1,690,458	+		CCNA_01574	0.39	-1.5
1,690,463	+		CCNA_01574	0.39	+0.9
1,690,463	+		CCNA_01574	0.39	-0.6
1,690,471	-		CCNA_01574	0.41	-0.3
1,690,471	-		CCNA_01574	0.41	-0.8
1,690,474	+		CCNA_01574	0.41	-1.3
1,690,474	+		CCNA_01574	0.41	+0.5
1,690,562	+		CCNA_01574	0.53	-1.8
1,690,570	-		CCNA_01574	0.54	-1.2
1,690,570	-		CCNA_01574	0.54	-1.5
1,690,570	-		CCNA_01574	0.54	+1.5
1,690,570	-		CCNA_01574	0.54	-1.5
1,690,589	-		CCNA_01574	0.57	-0.3
1,690,594	-		CCNA_01574	0.57	+0.3
1,690,597	+		CCNA_01574	0.58	-0.9
1,690,615	-		CCNA_01574	0.60	+2.1
1,690,617	+		CCNA_01574	0.60	-1.4
1,690,617	+		CCNA_01574	0.60	-1.1
1,690,632	+		CCNA_01574	0.62	-0.6