Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00775

Experiment: PYE with Chloramphenicol 0.0005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00774 and CCNA_00775 are separated by 9 nucleotidesCCNA_00775 and CCNA_00776 are separated by 92 nucleotides CCNA_00774: CCNA_00774 - ring hydroxylating diooxygenase, at 829,317 to 830,426 _00774 CCNA_00775: CCNA_00775 - aspartate aminotransferase, at 830,436 to 831,593 _00775 CCNA_00776: CCNA_00776 - OAR protein precursor, at 831,686 to 835,249 _00776 Position (kb) 830 831 832Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 829.463 kb on - strand, within CCNA_00774at 829.473 kb on + strand, within CCNA_00774at 829.473 kb on + strand, within CCNA_00774at 829.481 kb on - strand, within CCNA_00774at 829.481 kb on - strand, within CCNA_00774at 829.481 kb on - strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.494 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.499 kb on + strand, within CCNA_00774at 829.502 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.507 kb on - strand, within CCNA_00774at 829.525 kb on - strand, within CCNA_00774at 829.547 kb on - strand, within CCNA_00774at 829.569 kb on + strand, within CCNA_00774at 829.593 kb on - strand, within CCNA_00774at 829.623 kb on + strand, within CCNA_00774at 829.631 kb on - strand, within CCNA_00774at 829.675 kb on + strand, within CCNA_00774at 829.683 kb on + strand, within CCNA_00774at 829.683 kb on - strand, within CCNA_00774at 829.707 kb on + strand, within CCNA_00774at 829.707 kb on + strand, within CCNA_00774at 829.725 kb on + strand, within CCNA_00774at 829.725 kb on + strand, within CCNA_00774at 829.741 kb on + strand, within CCNA_00774at 829.795 kb on - strand, within CCNA_00774at 829.811 kb on + strand, within CCNA_00774at 829.811 kb on + strand, within CCNA_00774at 829.819 kb on - strand, within CCNA_00774at 829.819 kb on - strand, within CCNA_00774at 829.835 kb on - strand, within CCNA_00774at 829.840 kb on - strand, within CCNA_00774at 829.860 kb on + strand, within CCNA_00774at 829.860 kb on + strand, within CCNA_00774at 829.869 kb on - strand, within CCNA_00774at 829.888 kb on + strand, within CCNA_00774at 829.888 kb on + strand, within CCNA_00774at 829.896 kb on - strand, within CCNA_00774at 829.899 kb on + strand, within CCNA_00774at 829.907 kb on - strand, within CCNA_00774at 830.006 kb on + strand, within CCNA_00774at 830.012 kb on + strand, within CCNA_00774at 830.012 kb on + strand, within CCNA_00774at 830.017 kb on + strand, within CCNA_00774at 830.020 kb on - strand, within CCNA_00774at 830.020 kb on - strand, within CCNA_00774at 830.062 kb on + strand, within CCNA_00774at 830.070 kb on - strand, within CCNA_00774at 830.083 kb on + strand, within CCNA_00774at 830.170 kb on + strand, within CCNA_00774at 830.251 kb on - strand, within CCNA_00774at 830.259 kb on + strand, within CCNA_00774at 830.289 kb on + strand, within CCNA_00774at 830.289 kb on + strand, within CCNA_00774at 830.289 kb on + strand, within CCNA_00774at 830.289 kb on + strand, within CCNA_00774at 830.297 kb on - strand, within CCNA_00774at 830.297 kb on - strand, within CCNA_00774at 830.316 kb on - strandat 830.337 kb on - strandat 830.337 kb on - strandat 830.416 kb on + strandat 830.420 kb on + strandat 830.444 kb on - strandat 830.473 kb on + strandat 830.486 kb on - strandat 830.508 kb on - strandat 830.531 kb on - strandat 830.601 kb on + strand, within CCNA_00775at 830.608 kb on - strand, within CCNA_00775at 830.610 kb on + strandat 830.610 kb on + strand, within CCNA_00775at 830.636 kb on + strand, within CCNA_00775at 830.675 kb on - strand, within CCNA_00775at 830.691 kb on + strand, within CCNA_00775at 830.709 kb on - strand, within CCNA_00775at 830.760 kb on + strand, within CCNA_00775at 830.771 kb on - strand, within CCNA_00775at 830.773 kb on + strand, within CCNA_00775at 830.781 kb on - strand, within CCNA_00775at 830.797 kb on - strand, within CCNA_00775at 830.814 kb on + strand, within CCNA_00775at 830.822 kb on - strand, within CCNA_00775at 830.823 kb on - strand, within CCNA_00775at 830.823 kb on - strand, within CCNA_00775at 830.847 kb on + strand, within CCNA_00775at 830.847 kb on + strand, within CCNA_00775at 830.847 kb on + strand, within CCNA_00775at 830.850 kb on - strand, within CCNA_00775at 830.855 kb on - strandat 830.855 kb on - strand, within CCNA_00775at 830.861 kb on - strand, within CCNA_00775at 830.887 kb on - strand, within CCNA_00775at 830.903 kb on - strand, within CCNA_00775at 830.919 kb on + strand, within CCNA_00775at 830.950 kb on - strand, within CCNA_00775at 830.952 kb on + strand, within CCNA_00775at 830.960 kb on - strandat 830.995 kb on + strand, within CCNA_00775at 831.096 kb on - strand, within CCNA_00775at 831.102 kb on + strand, within CCNA_00775at 831.110 kb on - strand, within CCNA_00775at 831.110 kb on - strand, within CCNA_00775at 831.110 kb on - strand, within CCNA_00775at 831.124 kb on + strand, within CCNA_00775at 831.181 kb on + strand, within CCNA_00775at 831.191 kb on + strand, within CCNA_00775at 831.228 kb on - strand, within CCNA_00775at 831.240 kb on - strand, within CCNA_00775at 831.244 kb on + strand, within CCNA_00775at 831.249 kb on + strand, within CCNA_00775at 831.252 kb on - strand, within CCNA_00775at 831.252 kb on - strand, within CCNA_00775at 831.314 kb on + strand, within CCNA_00775at 831.337 kb on + strand, within CCNA_00775at 831.345 kb on + strand, within CCNA_00775at 831.356 kb on + strand, within CCNA_00775at 831.356 kb on + strand, within CCNA_00775at 831.364 kb on - strand, within CCNA_00775at 831.364 kb on - strand, within CCNA_00775at 831.371 kb on + strand, within CCNA_00775at 831.398 kb on + strand, within CCNA_00775at 831.398 kb on + strand, within CCNA_00775at 831.398 kb on + strand, within CCNA_00775at 831.398 kb on + strand, within CCNA_00775at 831.406 kb on - strand, within CCNA_00775at 831.411 kb on - strand, within CCNA_00775at 831.444 kb on - strand, within CCNA_00775at 831.450 kb on - strand, within CCNA_00775at 831.480 kb on - strandat 831.549 kb on + strandat 831.591 kb on - strandat 831.658 kb on - strandat 831.658 kb on - strandat 831.698 kb on + strandat 831.706 kb on - strandat 831.706 kb on - strandat 831.717 kb on + strandat 831.776 kb on + strandat 831.811 kb on - strandat 831.811 kb on - strandat 831.857 kb on + strandat 831.862 kb on + strandat 831.892 kb on + strandat 831.893 kb on - strandat 831.893 kb on - strandat 831.901 kb on - strandat 831.903 kb on + strandat 831.931 kb on + strandat 831.939 kb on - strandat 831.939 kb on - strandat 831.939 kb on - strandat 831.940 kb on - strandat 831.953 kb on - strandat 831.956 kb on - strandat 831.983 kb on - strandat 831.986 kb on + strandat 832.008 kb on + strandat 832.058 kb on - strand, within CCNA_00776at 832.074 kb on - strand, within CCNA_00776at 832.086 kb on + strand, within CCNA_00776at 832.086 kb on + strand, within CCNA_00776at 832.086 kb on + strand, within CCNA_00776at 832.086 kb on + strand, within CCNA_00776at 832.101 kb on + strand, within CCNA_00776at 832.101 kb on + strand, within CCNA_00776at 832.109 kb on - strand, within CCNA_00776at 832.168 kb on + strand, within CCNA_00776at 832.176 kb on - strand, within CCNA_00776at 832.186 kb on - strand, within CCNA_00776at 832.186 kb on - strand, within CCNA_00776at 832.186 kb on - strand, within CCNA_00776at 832.186 kb on - strand, within CCNA_00776at 832.186 kb on - strand, within CCNA_00776at 832.191 kb on + strand, within CCNA_00776at 832.191 kb on + strand, within CCNA_00776at 832.300 kb on + strand, within CCNA_00776at 832.300 kb on + strand, within CCNA_00776at 832.308 kb on - strand, within CCNA_00776at 832.308 kb on - strand, within CCNA_00776at 832.319 kb on + strand, within CCNA_00776at 832.406 kb on - strand, within CCNA_00776at 832.411 kb on - strand, within CCNA_00776at 832.411 kb on - strand, within CCNA_00776at 832.414 kb on + strand, within CCNA_00776at 832.414 kb on + strand, within CCNA_00776at 832.414 kb on + strand, within CCNA_00776at 832.414 kb on + strand, within CCNA_00776at 832.421 kb on + strand, within CCNA_00776at 832.422 kb on - strand, within CCNA_00776at 832.431 kb on + strand, within CCNA_00776at 832.431 kb on + strand, within CCNA_00776at 832.439 kb on - strand, within CCNA_00776at 832.514 kb on + strandat 832.514 kb on + strand, within CCNA_00776at 832.514 kb on + strand, within CCNA_00776at 832.514 kb on + strand, within CCNA_00776at 832.514 kb on + strand, within CCNA_00776at 832.522 kb on - strand, within CCNA_00776at 832.524 kb on + strand, within CCNA_00776at 832.572 kb on - strand, within CCNA_00776at 832.591 kb on - strand, within CCNA_00776at 832.591 kb on - strand, within CCNA_00776

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Chloramphenicol 0.0005 mg/ml
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829,463 - CCNA_00774 0.13 +1.8
829,473 + CCNA_00774 0.14 +1.0
829,473 + CCNA_00774 0.14 +0.5
829,481 - CCNA_00774 0.15 +3.2
829,481 - CCNA_00774 0.15 +0.8
829,481 - CCNA_00774 0.15 +0.7
829,494 + CCNA_00774 0.16 -1.3
829,494 + CCNA_00774 0.16 +1.4
829,494 + CCNA_00774 0.16 +0.9
829,494 + CCNA_00774 0.16 -2.1
829,494 + CCNA_00774 0.16 +0.1
829,499 + CCNA_00774 0.16 +1.2
829,499 + CCNA_00774 0.16 -1.2
829,499 + CCNA_00774 0.16 -0.1
829,499 + CCNA_00774 0.16 +0.8
829,499 + CCNA_00774 0.16 -1.3
829,499 + CCNA_00774 0.16 -1.4
829,499 + CCNA_00774 0.16 -1.5
829,499 + CCNA_00774 0.16 -0.7
829,502 - CCNA_00774 0.17 +0.6
829,507 - CCNA_00774 0.17 +0.3
829,507 - CCNA_00774 0.17 +0.1
829,525 - CCNA_00774 0.19 -1.6
829,547 - CCNA_00774 0.21 +0.3
829,569 + CCNA_00774 0.23 +0.5
829,593 - CCNA_00774 0.25 +0.4
829,623 + CCNA_00774 0.28 +0.9
829,631 - CCNA_00774 0.28 -1.3
829,675 + CCNA_00774 0.32 -1.5
829,683 + CCNA_00774 0.33 +0.4
829,683 - CCNA_00774 0.33 +0.2
829,707 + CCNA_00774 0.35 +0.1
829,707 + CCNA_00774 0.35 -0.8
829,725 + CCNA_00774 0.37 +1.4
829,725 + CCNA_00774 0.37 +0.7
829,741 + CCNA_00774 0.38 -0.9
829,795 - CCNA_00774 0.43 -1.3
829,811 + CCNA_00774 0.45 +1.0
829,811 + CCNA_00774 0.45 +0.1
829,819 - CCNA_00774 0.45 -0.7
829,819 - CCNA_00774 0.45 -1.4
829,835 - CCNA_00774 0.47 -0.3
829,840 - CCNA_00774 0.47 -0.8
829,860 + CCNA_00774 0.49 -1.5
829,860 + CCNA_00774 0.49 -0.6
829,869 - CCNA_00774 0.50 -0.7
829,888 + CCNA_00774 0.51 -0.7
829,888 + CCNA_00774 0.51 -0.2
829,896 - CCNA_00774 0.52 +0.0
829,899 + CCNA_00774 0.52 +0.0
829,907 - CCNA_00774 0.53 -0.4
830,006 + CCNA_00774 0.62 -1.5
830,012 + CCNA_00774 0.63 -1.1
830,012 + CCNA_00774 0.63 -1.0
830,017 + CCNA_00774 0.63 -1.3
830,020 - CCNA_00774 0.63 +1.5
830,020 - CCNA_00774 0.63 -0.1
830,062 + CCNA_00774 0.67 -1.6
830,070 - CCNA_00774 0.68 +0.8
830,083 + CCNA_00774 0.69 -0.0
830,170 + CCNA_00774 0.77 +0.8
830,251 - CCNA_00774 0.84 -0.0
830,259 + CCNA_00774 0.85 -1.3
830,289 + CCNA_00774 0.88 -0.0
830,289 + CCNA_00774 0.88 -0.0
830,289 + CCNA_00774 0.88 -0.7
830,289 + CCNA_00774 0.88 -0.1
830,297 - CCNA_00774 0.88 +0.3
830,297 - CCNA_00774 0.88 +0.9
830,316 - +0.3
830,337 - +1.3
830,337 - +1.6
830,416 + -1.4
830,420 + +1.4
830,444 - +0.0
830,473 + -1.8
830,486 - -1.4
830,508 - -1.5
830,531 - +0.5
830,601 + CCNA_00775 0.14 -0.8
830,608 - CCNA_00775 0.15 +1.5
830,610 + +2.4
830,610 + CCNA_00775 0.15 +3.0
830,636 + CCNA_00775 0.17 +1.2
830,675 - CCNA_00775 0.21 -1.1
830,691 + CCNA_00775 0.22 -0.0
830,709 - CCNA_00775 0.24 -2.3
830,760 + CCNA_00775 0.28 -2.3
830,771 - CCNA_00775 0.29 -0.3
830,773 + CCNA_00775 0.29 -2.7
830,781 - CCNA_00775 0.30 -0.5
830,797 - CCNA_00775 0.31 -1.8
830,814 + CCNA_00775 0.33 +1.5
830,822 - CCNA_00775 0.33 -0.0
830,823 - CCNA_00775 0.33 +1.3
830,823 - CCNA_00775 0.33 +0.3
830,847 + CCNA_00775 0.35 +0.2
830,847 + CCNA_00775 0.35 +1.4
830,847 + CCNA_00775 0.35 +0.2
830,850 - CCNA_00775 0.36 +1.2
830,855 - +1.2
830,855 - CCNA_00775 0.36 +2.4
830,861 - CCNA_00775 0.37 -0.6
830,887 - CCNA_00775 0.39 +0.1
830,903 - CCNA_00775 0.40 +1.6
830,919 + CCNA_00775 0.42 -0.9
830,950 - CCNA_00775 0.44 +1.2
830,952 + CCNA_00775 0.45 +1.1
830,960 - +1.6
830,995 + CCNA_00775 0.48 +0.2
831,096 - CCNA_00775 0.57 +0.3
831,102 + CCNA_00775 0.58 +1.3
831,110 - CCNA_00775 0.58 -2.2
831,110 - CCNA_00775 0.58 -0.8
831,110 - CCNA_00775 0.58 +0.0
831,124 + CCNA_00775 0.59 +0.9
831,181 + CCNA_00775 0.64 -0.3
831,191 + CCNA_00775 0.65 +1.9
831,228 - CCNA_00775 0.68 +1.1
831,240 - CCNA_00775 0.69 +0.4
831,244 + CCNA_00775 0.70 -1.2
831,249 + CCNA_00775 0.70 +0.4
831,252 - CCNA_00775 0.70 -0.7
831,252 - CCNA_00775 0.70 +0.1
831,314 + CCNA_00775 0.76 +0.8
831,337 + CCNA_00775 0.78 +0.2
831,345 + CCNA_00775 0.78 -0.6
831,356 + CCNA_00775 0.79 -0.6
831,356 + CCNA_00775 0.79 -0.8
831,364 - CCNA_00775 0.80 +1.0
831,364 - CCNA_00775 0.80 -0.1
831,371 + CCNA_00775 0.81 +0.3
831,398 + CCNA_00775 0.83 -0.0
831,398 + CCNA_00775 0.83 -0.0
831,398 + CCNA_00775 0.83 +1.3
831,398 + CCNA_00775 0.83 -1.9
831,406 - CCNA_00775 0.84 -0.0
831,411 - CCNA_00775 0.84 +0.1
831,444 - CCNA_00775 0.87 -1.5
831,450 - CCNA_00775 0.88 +1.0
831,480 - -1.6
831,549 + -1.1
831,591 - +0.3
831,658 - +0.0
831,658 - -0.0
831,698 + +0.5
831,706 - +0.0
831,706 - -0.8
831,717 + -0.2
831,776 + -0.2
831,811 - +0.2
831,811 - +0.9
831,857 + -0.7
831,862 + +1.4
831,892 + +1.4
831,893 - -2.4
831,893 - -1.5
831,901 - +1.3
831,903 + +1.2
831,931 + +0.8
831,939 - +1.2
831,939 - +0.8
831,939 - +1.3
831,940 - +1.1
831,953 - +0.5
831,956 - +0.3
831,983 - +1.4
831,986 + -0.4
832,008 + +0.5
832,058 - CCNA_00776 0.10 -1.6
832,074 - CCNA_00776 0.11 -0.4
832,086 + CCNA_00776 0.11 +0.3
832,086 + CCNA_00776 0.11 -0.5
832,086 + CCNA_00776 0.11 +0.6
832,086 + CCNA_00776 0.11 -0.6
832,101 + CCNA_00776 0.12 -2.8
832,101 + CCNA_00776 0.12 +0.8
832,109 - CCNA_00776 0.12 -1.3
832,168 + CCNA_00776 0.14 -1.5
832,176 - CCNA_00776 0.14 +0.5
832,186 - CCNA_00776 0.14 +0.3
832,186 - CCNA_00776 0.14 -1.4
832,186 - CCNA_00776 0.14 +2.7
832,186 - CCNA_00776 0.14 +1.6
832,186 - CCNA_00776 0.14 -0.3
832,191 + CCNA_00776 0.14 -0.5
832,191 + CCNA_00776 0.14 +0.3
832,300 + CCNA_00776 0.17 +0.1
832,300 + CCNA_00776 0.17 -0.3
832,308 - CCNA_00776 0.17 -0.4
832,308 - CCNA_00776 0.17 -0.1
832,319 + CCNA_00776 0.18 -0.7
832,406 - CCNA_00776 0.20 -1.5
832,411 - CCNA_00776 0.20 -0.7
832,411 - CCNA_00776 0.20 -0.4
832,414 + CCNA_00776 0.20 +2.4
832,414 + CCNA_00776 0.20 -0.5
832,414 + CCNA_00776 0.20 +0.1
832,414 + CCNA_00776 0.20 +1.7
832,421 + CCNA_00776 0.21 -1.4
832,422 - CCNA_00776 0.21 -0.4
832,431 + CCNA_00776 0.21 -0.6
832,431 + CCNA_00776 0.21 -0.1
832,439 - CCNA_00776 0.21 -1.9
832,514 + +1.4
832,514 + CCNA_00776 0.23 -1.3
832,514 + CCNA_00776 0.23 +0.2
832,514 + CCNA_00776 0.23 -0.3
832,514 + CCNA_00776 0.23 +0.6
832,522 - CCNA_00776 0.23 -0.6
832,524 + CCNA_00776 0.24 +0.9
832,572 - CCNA_00776 0.25 +0.5
832,591 - CCNA_00776 0.25 -1.2
832,591 - CCNA_00776 0.25 +0.7

Or see this region's nucleotide sequence