Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18785

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS18780 and CA265_RS18785 are separated by 58 nucleotidesCA265_RS18785 and CA265_RS18790 are separated by 68 nucleotidesCA265_RS18790 and CA265_RS18795 are separated by 31 nucleotides CA265_RS18780: CA265_RS18780 - YicC family protein, at 4,673,367 to 4,674,230 _RS18780 CA265_RS18785: CA265_RS18785 - guanylate kinase, at 4,674,289 to 4,674,855 _RS18785 CA265_RS18790: CA265_RS18790 - four helix bundle protein, at 4,674,924 to 4,675,292 _RS18790 CA265_RS18795: CA265_RS18795 - nicotinic acid mononucleotide adenylyltransferase, at 4,675,324 to 4,675,917 _RS18795 Position (kb) 4674 4675Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4673.319 kb on + strandat 4673.319 kb on + strandat 4673.320 kb on - strandat 4673.383 kb on + strandat 4673.605 kb on + strand, within CA265_RS18780at 4673.619 kb on + strand, within CA265_RS18780at 4673.639 kb on + strand, within CA265_RS18780at 4673.709 kb on + strand, within CA265_RS18780at 4673.878 kb on + strand, within CA265_RS18780at 4673.988 kb on + strand, within CA265_RS18780at 4674.001 kb on + strand, within CA265_RS18780at 4674.008 kb on + strand, within CA265_RS18780at 4674.128 kb on + strand, within CA265_RS18780at 4674.175 kb on + strandat 4674.179 kb on + strandat 4674.854 kb on - strandat 4674.889 kb on + strandat 4674.892 kb on - strandat 4674.892 kb on - strandat 4674.911 kb on + strandat 4674.914 kb on - strandat 4674.914 kb on - strandat 4674.944 kb on - strandat 4675.095 kb on - strand, within CA265_RS18790at 4675.098 kb on + strand, within CA265_RS18790at 4675.100 kb on + strand, within CA265_RS18790at 4675.166 kb on - strand, within CA265_RS18790at 4675.184 kb on + strand, within CA265_RS18790at 4675.188 kb on + strand, within CA265_RS18790at 4675.188 kb on + strand, within CA265_RS18790at 4675.189 kb on - strand, within CA265_RS18790at 4675.216 kb on + strand, within CA265_RS18790at 4675.223 kb on - strand, within CA265_RS18790at 4675.265 kb on + strandat 4675.278 kb on + strandat 4675.278 kb on + strandat 4675.278 kb on + strandat 4675.278 kb on + strandat 4675.278 kb on + strandat 4675.278 kb on + strandat 4675.279 kb on - strandat 4675.290 kb on + strandat 4675.305 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
4,673,319 + -0.7
4,673,319 + -0.6
4,673,320 - +0.9
4,673,383 + +1.1
4,673,605 + CA265_RS18780 0.28 +0.3
4,673,619 + CA265_RS18780 0.29 -1.8
4,673,639 + CA265_RS18780 0.31 -1.3
4,673,709 + CA265_RS18780 0.40 -0.7
4,673,878 + CA265_RS18780 0.59 -0.9
4,673,988 + CA265_RS18780 0.72 -2.3
4,674,001 + CA265_RS18780 0.73 -0.4
4,674,008 + CA265_RS18780 0.74 -0.5
4,674,128 + CA265_RS18780 0.88 -0.6
4,674,175 + -2.8
4,674,179 + +0.1
4,674,854 - -1.6
4,674,889 + -0.3
4,674,892 - -1.0
4,674,892 - +2.1
4,674,911 + +1.0
4,674,914 - +0.1
4,674,914 - -0.6
4,674,944 - -0.4
4,675,095 - CA265_RS18790 0.46 -0.1
4,675,098 + CA265_RS18790 0.47 +0.0
4,675,100 + CA265_RS18790 0.48 -0.4
4,675,166 - CA265_RS18790 0.66 -0.3
4,675,184 + CA265_RS18790 0.70 -1.2
4,675,188 + CA265_RS18790 0.72 -0.7
4,675,188 + CA265_RS18790 0.72 +0.8
4,675,189 - CA265_RS18790 0.72 +0.4
4,675,216 + CA265_RS18790 0.79 +0.1
4,675,223 - CA265_RS18790 0.81 +0.1
4,675,265 + +0.1
4,675,278 + -1.9
4,675,278 + +0.5
4,675,278 + +0.1
4,675,278 + -1.2
4,675,278 + +0.6
4,675,278 + -0.2
4,675,279 - +0.6
4,675,290 + +0.4
4,675,305 + -0.1

Or see this region's nucleotide sequence