Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS18135

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS18130 and CA265_RS18135 are separated by 225 nucleotidesCA265_RS18135 and CA265_RS18140 are separated by 14 nucleotides CA265_RS18130: CA265_RS18130 - gliding motility-associated lipoprotein, at 4,525,491 to 4,526,816 _RS18130 CA265_RS18135: CA265_RS18135 - uroporphyrinogen-III synthase, at 4,527,042 to 4,527,812 _RS18135 CA265_RS18140: CA265_RS18140 - DUF4271 domain-containing protein, at 4,527,827 to 4,528,804 _RS18140 Position (kb) 4527 4528Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4526.092 kb on + strand, within CA265_RS18130at 4526.093 kb on - strand, within CA265_RS18130at 4526.141 kb on - strand, within CA265_RS18130at 4526.203 kb on + strand, within CA265_RS18130at 4526.204 kb on - strand, within CA265_RS18130at 4526.232 kb on - strand, within CA265_RS18130at 4526.260 kb on - strand, within CA265_RS18130at 4526.269 kb on + strand, within CA265_RS18130at 4526.286 kb on - strand, within CA265_RS18130at 4526.295 kb on + strand, within CA265_RS18130at 4526.295 kb on + strand, within CA265_RS18130at 4526.322 kb on + strand, within CA265_RS18130at 4526.332 kb on + strand, within CA265_RS18130at 4526.333 kb on - strand, within CA265_RS18130at 4526.335 kb on + strand, within CA265_RS18130at 4526.336 kb on - strand, within CA265_RS18130at 4526.434 kb on + strand, within CA265_RS18130at 4526.483 kb on + strand, within CA265_RS18130at 4526.609 kb on + strand, within CA265_RS18130at 4526.664 kb on - strand, within CA265_RS18130at 4526.680 kb on + strand, within CA265_RS18130at 4526.680 kb on + strand, within CA265_RS18130at 4526.703 kb on - strandat 4526.726 kb on - strandat 4526.775 kb on + strandat 4526.776 kb on - strandat 4526.776 kb on - strandat 4526.776 kb on - strandat 4526.776 kb on - strandat 4526.782 kb on - strandat 4526.782 kb on - strandat 4526.782 kb on - strandat 4526.787 kb on + strandat 4526.787 kb on + strandat 4526.787 kb on + strandat 4526.796 kb on + strandat 4526.823 kb on + strandat 4526.844 kb on - strandat 4526.891 kb on - strandat 4526.929 kb on - strandat 4526.954 kb on - strandat 4527.044 kb on - strandat 4527.055 kb on - strandat 4527.274 kb on - strand, within CA265_RS18135at 4527.385 kb on + strand, within CA265_RS18135at 4527.415 kb on - strand, within CA265_RS18135at 4527.482 kb on - strand, within CA265_RS18135at 4527.482 kb on - strand, within CA265_RS18135at 4527.636 kb on - strand, within CA265_RS18135at 4527.829 kb on - strandat 4527.845 kb on - strandat 4527.913 kb on + strandat 4527.919 kb on + strandat 4527.926 kb on + strand, within CA265_RS18140at 4527.947 kb on + strand, within CA265_RS18140at 4527.997 kb on - strand, within CA265_RS18140at 4528.012 kb on + strand, within CA265_RS18140at 4528.178 kb on - strand, within CA265_RS18140at 4528.178 kb on - strand, within CA265_RS18140at 4528.188 kb on - strand, within CA265_RS18140at 4528.189 kb on + strand, within CA265_RS18140at 4528.189 kb on + strand, within CA265_RS18140at 4528.189 kb on + strand, within CA265_RS18140at 4528.224 kb on + strand, within CA265_RS18140at 4528.224 kb on + strand, within CA265_RS18140at 4528.225 kb on - strand, within CA265_RS18140at 4528.336 kb on + strand, within CA265_RS18140at 4528.343 kb on + strand, within CA265_RS18140at 4528.430 kb on - strand, within CA265_RS18140at 4528.518 kb on + strand, within CA265_RS18140at 4528.518 kb on + strand, within CA265_RS18140at 4528.519 kb on - strand, within CA265_RS18140at 4528.607 kb on - strand, within CA265_RS18140at 4528.686 kb on + strand, within CA265_RS18140at 4528.693 kb on + strand, within CA265_RS18140at 4528.694 kb on - strand, within CA265_RS18140at 4528.721 kb on - strandat 4528.752 kb on - strandat 4528.810 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
4,526,092 + CA265_RS18130 0.45 +0.5
4,526,093 - CA265_RS18130 0.45 +2.1
4,526,141 - CA265_RS18130 0.49 +0.8
4,526,203 + CA265_RS18130 0.54 +0.8
4,526,204 - CA265_RS18130 0.54 +1.0
4,526,232 - CA265_RS18130 0.56 -0.9
4,526,260 - CA265_RS18130 0.58 +1.2
4,526,269 + CA265_RS18130 0.59 +0.9
4,526,286 - CA265_RS18130 0.60 +1.0
4,526,295 + CA265_RS18130 0.61 +1.1
4,526,295 + CA265_RS18130 0.61 +0.1
4,526,322 + CA265_RS18130 0.63 +1.1
4,526,332 + CA265_RS18130 0.63 +1.6
4,526,333 - CA265_RS18130 0.63 +1.7
4,526,335 + CA265_RS18130 0.64 +1.0
4,526,336 - CA265_RS18130 0.64 +2.8
4,526,434 + CA265_RS18130 0.71 +0.6
4,526,483 + CA265_RS18130 0.75 +1.6
4,526,609 + CA265_RS18130 0.84 +1.3
4,526,664 - CA265_RS18130 0.88 +0.7
4,526,680 + CA265_RS18130 0.90 +1.6
4,526,680 + CA265_RS18130 0.90 +0.2
4,526,703 - +2.1
4,526,726 - -0.1
4,526,775 + +0.8
4,526,776 - -0.6
4,526,776 - +1.0
4,526,776 - +1.5
4,526,776 - +1.7
4,526,782 - -1.1
4,526,782 - +0.3
4,526,782 - +1.2
4,526,787 + +1.6
4,526,787 + +1.1
4,526,787 + -0.5
4,526,796 + +0.5
4,526,823 + +1.3
4,526,844 - -1.6
4,526,891 - -0.9
4,526,929 - +0.9
4,526,954 - -0.9
4,527,044 - -0.5
4,527,055 - -0.3
4,527,274 - CA265_RS18135 0.30 -1.2
4,527,385 + CA265_RS18135 0.44 -2.5
4,527,415 - CA265_RS18135 0.48 -0.0
4,527,482 - CA265_RS18135 0.57 -1.4
4,527,482 - CA265_RS18135 0.57 +1.1
4,527,636 - CA265_RS18135 0.77 -0.4
4,527,829 - +0.3
4,527,845 - -0.1
4,527,913 + -1.0
4,527,919 + +0.1
4,527,926 + CA265_RS18140 0.10 +0.7
4,527,947 + CA265_RS18140 0.12 +0.3
4,527,997 - CA265_RS18140 0.17 -4.2
4,528,012 + CA265_RS18140 0.19 -0.4
4,528,178 - CA265_RS18140 0.36 +0.2
4,528,178 - CA265_RS18140 0.36 +1.0
4,528,188 - CA265_RS18140 0.37 -2.2
4,528,189 + CA265_RS18140 0.37 -0.6
4,528,189 + CA265_RS18140 0.37 +1.0
4,528,189 + CA265_RS18140 0.37 -0.7
4,528,224 + CA265_RS18140 0.41 -0.0
4,528,224 + CA265_RS18140 0.41 -0.6
4,528,225 - CA265_RS18140 0.41 -0.2
4,528,336 + CA265_RS18140 0.52 -0.2
4,528,343 + CA265_RS18140 0.53 +0.4
4,528,430 - CA265_RS18140 0.62 +0.3
4,528,518 + CA265_RS18140 0.71 +0.0
4,528,518 + CA265_RS18140 0.71 -2.5
4,528,519 - CA265_RS18140 0.71 -0.4
4,528,607 - CA265_RS18140 0.80 +1.1
4,528,686 + CA265_RS18140 0.88 -1.9
4,528,693 + CA265_RS18140 0.89 +0.6
4,528,694 - CA265_RS18140 0.89 +0.9
4,528,721 - +2.2
4,528,752 - -0.9
4,528,810 - +0.3

Or see this region's nucleotide sequence