Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS16160

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS16150 and CA265_RS16155 are separated by 234 nucleotidesCA265_RS16155 and CA265_RS16160 overlap by 4 nucleotidesCA265_RS16160 and CA265_RS16165 are separated by 11 nucleotides CA265_RS16150: CA265_RS16150 - UDP-diphosphatase, at 4,055,985 to 4,056,779 _RS16150 CA265_RS16155: CA265_RS16155 - tRNA pseudouridine(55) synthase TruB, at 4,057,014 to 4,057,745 _RS16155 CA265_RS16160: CA265_RS16160 - hypothetical protein, at 4,057,742 to 4,058,602 _RS16160 CA265_RS16165: CA265_RS16165 - riboflavin biosynthesis protein RibF, at 4,058,614 to 4,059,600 _RS16165 Position (kb) 4057 4058 4059Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4056.773 kb on + strandat 4056.791 kb on - strandat 4056.791 kb on - strandat 4056.791 kb on - strandat 4056.823 kb on - strandat 4056.826 kb on + strandat 4056.892 kb on - strandat 4057.076 kb on + strandat 4057.076 kb on + strandat 4057.171 kb on + strand, within CA265_RS16155at 4057.172 kb on - strand, within CA265_RS16155at 4057.172 kb on - strand, within CA265_RS16155at 4057.172 kb on - strand, within CA265_RS16155at 4057.199 kb on + strand, within CA265_RS16155at 4057.199 kb on + strand, within CA265_RS16155at 4057.216 kb on + strand, within CA265_RS16155at 4057.229 kb on - strand, within CA265_RS16155at 4057.259 kb on + strand, within CA265_RS16155at 4057.340 kb on + strand, within CA265_RS16155at 4057.390 kb on + strand, within CA265_RS16155at 4057.391 kb on - strand, within CA265_RS16155at 4057.391 kb on - strand, within CA265_RS16155at 4057.448 kb on - strand, within CA265_RS16155at 4057.570 kb on - strand, within CA265_RS16155at 4057.570 kb on - strand, within CA265_RS16155at 4057.684 kb on + strandat 4057.684 kb on + strandat 4057.694 kb on + strandat 4057.774 kb on + strandat 4057.900 kb on - strand, within CA265_RS16160at 4057.914 kb on + strand, within CA265_RS16160at 4057.957 kb on - strand, within CA265_RS16160at 4058.165 kb on + strand, within CA265_RS16160at 4058.270 kb on + strand, within CA265_RS16160at 4058.275 kb on + strand, within CA265_RS16160at 4058.275 kb on + strand, within CA265_RS16160at 4058.286 kb on - strand, within CA265_RS16160at 4058.290 kb on - strand, within CA265_RS16160at 4058.336 kb on + strand, within CA265_RS16160at 4058.464 kb on + strand, within CA265_RS16160at 4059.601 kb on + strandat 4059.602 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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4,056,773 + +1.0
4,056,791 - -0.9
4,056,791 - +1.2
4,056,791 - +0.7
4,056,823 - -0.2
4,056,826 + +0.4
4,056,892 - +0.3
4,057,076 + +0.6
4,057,076 + -0.9
4,057,171 + CA265_RS16155 0.21 +1.6
4,057,172 - CA265_RS16155 0.22 -1.2
4,057,172 - CA265_RS16155 0.22 -1.0
4,057,172 - CA265_RS16155 0.22 -0.7
4,057,199 + CA265_RS16155 0.25 -2.3
4,057,199 + CA265_RS16155 0.25 +3.0
4,057,216 + CA265_RS16155 0.28 -0.0
4,057,229 - CA265_RS16155 0.29 -2.0
4,057,259 + CA265_RS16155 0.33 -0.6
4,057,340 + CA265_RS16155 0.45 +0.1
4,057,390 + CA265_RS16155 0.51 +0.8
4,057,391 - CA265_RS16155 0.52 -0.8
4,057,391 - CA265_RS16155 0.52 +0.7
4,057,448 - CA265_RS16155 0.59 +1.6
4,057,570 - CA265_RS16155 0.76 +0.0
4,057,570 - CA265_RS16155 0.76 -0.9
4,057,684 + -0.4
4,057,684 + +0.6
4,057,694 + +0.5
4,057,774 + +0.2
4,057,900 - CA265_RS16160 0.18 +0.7
4,057,914 + CA265_RS16160 0.20 -1.3
4,057,957 - CA265_RS16160 0.25 +0.5
4,058,165 + CA265_RS16160 0.49 +0.5
4,058,270 + CA265_RS16160 0.61 +0.3
4,058,275 + CA265_RS16160 0.62 +1.6
4,058,275 + CA265_RS16160 0.62 +1.5
4,058,286 - CA265_RS16160 0.63 -0.6
4,058,290 - CA265_RS16160 0.64 +0.6
4,058,336 + CA265_RS16160 0.69 -0.3
4,058,464 + CA265_RS16160 0.84 +0.8
4,059,601 + -1.7
4,059,602 - -1.2

Or see this region's nucleotide sequence