Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS15825 and CA265_RS15830 are separated by 107 nucleotides CA265_RS15830 and CA265_RS15835 are separated by 32 nucleotides CA265_RS15835 and CA265_RS15840 are separated by 80 nucleotides
CA265_RS15825: CA265_RS15825 - ketol-acid reductoisomerase, at 3,981,839 to 3,983,320
_RS15825
CA265_RS15830: CA265_RS15830 - 3-isopropylmalate dehydratase large subunit, at 3,983,428 to 3,984,840
_RS15830
CA265_RS15835: CA265_RS15835 - antibiotic biosynthesis monooxygenase, at 3,984,873 to 3,985,217
_RS15835
CA265_RS15840: CA265_RS15840 - 3-isopropylmalate dehydratase small subunit, at 3,985,298 to 3,985,885
_RS15840
Position (kb)
3983
3984
3985 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3982.430 kb on - strand, within CA265_RS15825 at 3982.525 kb on - strand, within CA265_RS15825 at 3982.542 kb on + strand, within CA265_RS15825 at 3982.553 kb on - strand, within CA265_RS15825 at 3982.561 kb on - strand, within CA265_RS15825 at 3982.605 kb on - strand, within CA265_RS15825 at 3982.605 kb on - strand, within CA265_RS15825 at 3982.617 kb on + strand, within CA265_RS15825 at 3982.646 kb on - strand, within CA265_RS15825 at 3982.760 kb on - strand, within CA265_RS15825 at 3982.760 kb on - strand, within CA265_RS15825 at 3982.760 kb on - strand, within CA265_RS15825 at 3982.917 kb on + strand, within CA265_RS15825 at 3983.084 kb on - strand, within CA265_RS15825 at 3983.094 kb on - strand, within CA265_RS15825 at 3983.094 kb on - strand, within CA265_RS15825 at 3983.102 kb on + strand, within CA265_RS15825 at 3983.106 kb on + strand, within CA265_RS15825 at 3983.387 kb on + strand at 3983.395 kb on + strand at 3983.523 kb on - strand at 3983.621 kb on + strand, within CA265_RS15830 at 3983.622 kb on - strand, within CA265_RS15830 at 3983.679 kb on + strand, within CA265_RS15830 at 3983.720 kb on - strand, within CA265_RS15830 at 3983.982 kb on - strand, within CA265_RS15830 at 3983.982 kb on - strand, within CA265_RS15830 at 3983.988 kb on + strand, within CA265_RS15830 at 3984.023 kb on - strand, within CA265_RS15830 at 3984.060 kb on - strand, within CA265_RS15830 at 3984.088 kb on - strand, within CA265_RS15830 at 3984.221 kb on + strand, within CA265_RS15830 at 3984.224 kb on - strand, within CA265_RS15830 at 3984.295 kb on + strand, within CA265_RS15830 at 3984.296 kb on - strand, within CA265_RS15830 at 3984.299 kb on + strand, within CA265_RS15830 at 3984.337 kb on - strand, within CA265_RS15830 at 3984.398 kb on - strand, within CA265_RS15830 at 3984.446 kb on - strand, within CA265_RS15830 at 3984.673 kb on - strand, within CA265_RS15830 at 3984.748 kb on - strand at 3984.831 kb on - strand at 3984.866 kb on + strand at 3984.879 kb on - strand at 3984.943 kb on + strand, within CA265_RS15835 at 3984.944 kb on - strand, within CA265_RS15835 at 3984.946 kb on + strand, within CA265_RS15835 at 3984.946 kb on + strand, within CA265_RS15835 at 3985.067 kb on + strand, within CA265_RS15835 at 3985.072 kb on - strand, within CA265_RS15835 at 3985.073 kb on + strand, within CA265_RS15835 at 3985.138 kb on - strand, within CA265_RS15835 at 3985.160 kb on - strand, within CA265_RS15835 at 3985.171 kb on - strand, within CA265_RS15835 at 3985.226 kb on - strand at 3985.228 kb on - strand at 3985.272 kb on + strand at 3985.370 kb on - strand, within CA265_RS15840 at 3985.480 kb on + strand, within CA265_RS15840 at 3985.487 kb on - strand, within CA265_RS15840 at 3985.538 kb on - strand, within CA265_RS15840 at 3985.612 kb on - strand, within CA265_RS15840 at 3985.657 kb on - strand, within CA265_RS15840 at 3985.736 kb on - strand, within CA265_RS15840 at 3985.745 kb on - strand, within CA265_RS15840 at 3985.818 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 3,982,430 - CA265_RS15825 0.40 -2.6 3,982,525 - CA265_RS15825 0.46 +0.1 3,982,542 + CA265_RS15825 0.47 -2.5 3,982,553 - CA265_RS15825 0.48 -4.4 3,982,561 - CA265_RS15825 0.49 -1.5 3,982,605 - CA265_RS15825 0.52 -4.0 3,982,605 - CA265_RS15825 0.52 -2.1 3,982,617 + CA265_RS15825 0.52 -0.9 3,982,646 - CA265_RS15825 0.54 +0.0 3,982,760 - CA265_RS15825 0.62 -1.4 3,982,760 - CA265_RS15825 0.62 -1.4 3,982,760 - CA265_RS15825 0.62 -4.1 3,982,917 + CA265_RS15825 0.73 -2.5 3,983,084 - CA265_RS15825 0.84 -0.8 3,983,094 - CA265_RS15825 0.85 -1.2 3,983,094 - CA265_RS15825 0.85 -3.1 3,983,102 + CA265_RS15825 0.85 -0.5 3,983,106 + CA265_RS15825 0.85 +0.6 3,983,387 + -1.5 3,983,395 + -0.0 3,983,523 - -1.4 3,983,621 + CA265_RS15830 0.14 -1.6 3,983,622 - CA265_RS15830 0.14 -0.6 3,983,679 + CA265_RS15830 0.18 -2.3 3,983,720 - CA265_RS15830 0.21 -0.7 3,983,982 - CA265_RS15830 0.39 -2.1 3,983,982 - CA265_RS15830 0.39 -2.7 3,983,988 + CA265_RS15830 0.40 -0.3 3,984,023 - CA265_RS15830 0.42 -2.1 3,984,060 - CA265_RS15830 0.45 -0.6 3,984,088 - CA265_RS15830 0.47 -2.8 3,984,221 + CA265_RS15830 0.56 -1.2 3,984,224 - CA265_RS15830 0.56 -4.6 3,984,295 + CA265_RS15830 0.61 -1.9 3,984,296 - CA265_RS15830 0.61 -1.2 3,984,299 + CA265_RS15830 0.62 -2.8 3,984,337 - CA265_RS15830 0.64 -4.3 3,984,398 - CA265_RS15830 0.69 -2.0 3,984,446 - CA265_RS15830 0.72 -3.0 3,984,673 - CA265_RS15830 0.88 -1.0 3,984,748 - -0.1 3,984,831 - -1.8 3,984,866 + -0.7 3,984,879 - -0.7 3,984,943 + CA265_RS15835 0.20 -1.0 3,984,944 - CA265_RS15835 0.21 -1.8 3,984,946 + CA265_RS15835 0.21 -0.7 3,984,946 + CA265_RS15835 0.21 -1.0 3,985,067 + CA265_RS15835 0.56 -0.4 3,985,072 - CA265_RS15835 0.58 -1.6 3,985,073 + CA265_RS15835 0.58 -1.8 3,985,138 - CA265_RS15835 0.77 -1.3 3,985,160 - CA265_RS15835 0.83 -3.6 3,985,171 - CA265_RS15835 0.86 -1.8 3,985,226 - -1.8 3,985,228 - +0.4 3,985,272 + -1.3 3,985,370 - CA265_RS15840 0.12 -2.9 3,985,480 + CA265_RS15840 0.31 -1.4 3,985,487 - CA265_RS15840 0.32 -0.8 3,985,538 - CA265_RS15840 0.41 -2.1 3,985,612 - CA265_RS15840 0.53 -1.5 3,985,657 - CA265_RS15840 0.61 -3.0 3,985,736 - CA265_RS15840 0.74 +0.3 3,985,745 - CA265_RS15840 0.76 -1.8 3,985,818 - -0.0
Or see this region's nucleotide sequence