Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS15830

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS15825 and CA265_RS15830 are separated by 107 nucleotidesCA265_RS15830 and CA265_RS15835 are separated by 32 nucleotidesCA265_RS15835 and CA265_RS15840 are separated by 80 nucleotides CA265_RS15825: CA265_RS15825 - ketol-acid reductoisomerase, at 3,981,839 to 3,983,320 _RS15825 CA265_RS15830: CA265_RS15830 - 3-isopropylmalate dehydratase large subunit, at 3,983,428 to 3,984,840 _RS15830 CA265_RS15835: CA265_RS15835 - antibiotic biosynthesis monooxygenase, at 3,984,873 to 3,985,217 _RS15835 CA265_RS15840: CA265_RS15840 - 3-isopropylmalate dehydratase small subunit, at 3,985,298 to 3,985,885 _RS15840 Position (kb) 3983 3984 3985Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3982.430 kb on - strand, within CA265_RS15825at 3982.525 kb on - strand, within CA265_RS15825at 3982.542 kb on + strand, within CA265_RS15825at 3982.553 kb on - strand, within CA265_RS15825at 3982.561 kb on - strand, within CA265_RS15825at 3982.605 kb on - strand, within CA265_RS15825at 3982.605 kb on - strand, within CA265_RS15825at 3982.617 kb on + strand, within CA265_RS15825at 3982.646 kb on - strand, within CA265_RS15825at 3982.760 kb on - strand, within CA265_RS15825at 3982.760 kb on - strand, within CA265_RS15825at 3982.760 kb on - strand, within CA265_RS15825at 3982.917 kb on + strand, within CA265_RS15825at 3983.084 kb on - strand, within CA265_RS15825at 3983.094 kb on - strand, within CA265_RS15825at 3983.094 kb on - strand, within CA265_RS15825at 3983.102 kb on + strand, within CA265_RS15825at 3983.106 kb on + strand, within CA265_RS15825at 3983.387 kb on + strandat 3983.395 kb on + strandat 3983.523 kb on - strandat 3983.621 kb on + strand, within CA265_RS15830at 3983.622 kb on - strand, within CA265_RS15830at 3983.679 kb on + strand, within CA265_RS15830at 3983.720 kb on - strand, within CA265_RS15830at 3983.982 kb on - strand, within CA265_RS15830at 3983.982 kb on - strand, within CA265_RS15830at 3983.988 kb on + strand, within CA265_RS15830at 3984.023 kb on - strand, within CA265_RS15830at 3984.060 kb on - strand, within CA265_RS15830at 3984.088 kb on - strand, within CA265_RS15830at 3984.221 kb on + strand, within CA265_RS15830at 3984.224 kb on - strand, within CA265_RS15830at 3984.295 kb on + strand, within CA265_RS15830at 3984.296 kb on - strand, within CA265_RS15830at 3984.299 kb on + strand, within CA265_RS15830at 3984.337 kb on - strand, within CA265_RS15830at 3984.398 kb on - strand, within CA265_RS15830at 3984.446 kb on - strand, within CA265_RS15830at 3984.673 kb on - strand, within CA265_RS15830at 3984.748 kb on - strandat 3984.831 kb on - strandat 3984.866 kb on + strandat 3984.879 kb on - strandat 3984.943 kb on + strand, within CA265_RS15835at 3984.944 kb on - strand, within CA265_RS15835at 3984.946 kb on + strand, within CA265_RS15835at 3984.946 kb on + strand, within CA265_RS15835at 3985.067 kb on + strand, within CA265_RS15835at 3985.072 kb on - strand, within CA265_RS15835at 3985.073 kb on + strand, within CA265_RS15835at 3985.138 kb on - strand, within CA265_RS15835at 3985.160 kb on - strand, within CA265_RS15835at 3985.171 kb on - strand, within CA265_RS15835at 3985.226 kb on - strandat 3985.228 kb on - strandat 3985.272 kb on + strandat 3985.370 kb on - strand, within CA265_RS15840at 3985.480 kb on + strand, within CA265_RS15840at 3985.487 kb on - strand, within CA265_RS15840at 3985.538 kb on - strand, within CA265_RS15840at 3985.612 kb on - strand, within CA265_RS15840at 3985.657 kb on - strand, within CA265_RS15840at 3985.736 kb on - strand, within CA265_RS15840at 3985.745 kb on - strand, within CA265_RS15840at 3985.818 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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3,982,430 - CA265_RS15825 0.40 -2.6
3,982,525 - CA265_RS15825 0.46 +0.1
3,982,542 + CA265_RS15825 0.47 -2.5
3,982,553 - CA265_RS15825 0.48 -4.4
3,982,561 - CA265_RS15825 0.49 -1.5
3,982,605 - CA265_RS15825 0.52 -4.0
3,982,605 - CA265_RS15825 0.52 -2.1
3,982,617 + CA265_RS15825 0.52 -0.9
3,982,646 - CA265_RS15825 0.54 +0.0
3,982,760 - CA265_RS15825 0.62 -1.4
3,982,760 - CA265_RS15825 0.62 -1.4
3,982,760 - CA265_RS15825 0.62 -4.1
3,982,917 + CA265_RS15825 0.73 -2.5
3,983,084 - CA265_RS15825 0.84 -0.8
3,983,094 - CA265_RS15825 0.85 -1.2
3,983,094 - CA265_RS15825 0.85 -3.1
3,983,102 + CA265_RS15825 0.85 -0.5
3,983,106 + CA265_RS15825 0.85 +0.6
3,983,387 + -1.5
3,983,395 + -0.0
3,983,523 - -1.4
3,983,621 + CA265_RS15830 0.14 -1.6
3,983,622 - CA265_RS15830 0.14 -0.6
3,983,679 + CA265_RS15830 0.18 -2.3
3,983,720 - CA265_RS15830 0.21 -0.7
3,983,982 - CA265_RS15830 0.39 -2.1
3,983,982 - CA265_RS15830 0.39 -2.7
3,983,988 + CA265_RS15830 0.40 -0.3
3,984,023 - CA265_RS15830 0.42 -2.1
3,984,060 - CA265_RS15830 0.45 -0.6
3,984,088 - CA265_RS15830 0.47 -2.8
3,984,221 + CA265_RS15830 0.56 -1.2
3,984,224 - CA265_RS15830 0.56 -4.6
3,984,295 + CA265_RS15830 0.61 -1.9
3,984,296 - CA265_RS15830 0.61 -1.2
3,984,299 + CA265_RS15830 0.62 -2.8
3,984,337 - CA265_RS15830 0.64 -4.3
3,984,398 - CA265_RS15830 0.69 -2.0
3,984,446 - CA265_RS15830 0.72 -3.0
3,984,673 - CA265_RS15830 0.88 -1.0
3,984,748 - -0.1
3,984,831 - -1.8
3,984,866 + -0.7
3,984,879 - -0.7
3,984,943 + CA265_RS15835 0.20 -1.0
3,984,944 - CA265_RS15835 0.21 -1.8
3,984,946 + CA265_RS15835 0.21 -0.7
3,984,946 + CA265_RS15835 0.21 -1.0
3,985,067 + CA265_RS15835 0.56 -0.4
3,985,072 - CA265_RS15835 0.58 -1.6
3,985,073 + CA265_RS15835 0.58 -1.8
3,985,138 - CA265_RS15835 0.77 -1.3
3,985,160 - CA265_RS15835 0.83 -3.6
3,985,171 - CA265_RS15835 0.86 -1.8
3,985,226 - -1.8
3,985,228 - +0.4
3,985,272 + -1.3
3,985,370 - CA265_RS15840 0.12 -2.9
3,985,480 + CA265_RS15840 0.31 -1.4
3,985,487 - CA265_RS15840 0.32 -0.8
3,985,538 - CA265_RS15840 0.41 -2.1
3,985,612 - CA265_RS15840 0.53 -1.5
3,985,657 - CA265_RS15840 0.61 -3.0
3,985,736 - CA265_RS15840 0.74 +0.3
3,985,745 - CA265_RS15840 0.76 -1.8
3,985,818 - -0.0

Or see this region's nucleotide sequence