Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS14655

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS14645 and CA265_RS14650 overlap by 4 nucleotidesCA265_RS14650 and CA265_RS14655 are separated by 514 nucleotidesCA265_RS14655 and CA265_RS14660 are separated by 86 nucleotides CA265_RS14645: CA265_RS14645 - hypothetical protein, at 3,685,589 to 3,685,795 _RS14645 CA265_RS14650: CA265_RS14650 - thiol-disulfide oxidoreductase, at 3,685,792 to 3,686,193 _RS14650 CA265_RS14655: CA265_RS14655 - bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase, at 3,686,708 to 3,687,262 _RS14655 CA265_RS14660: CA265_RS14660 - aspartate carbamoyltransferase, at 3,687,349 to 3,688,284 _RS14660 Position (kb) 3686 3687 3688Strain fitness (log2 ratio) -2 -1 0 1 2at 3685.716 kb on + strand, within CA265_RS14645at 3685.721 kb on - strand, within CA265_RS14645at 3685.743 kb on + strand, within CA265_RS14645at 3685.887 kb on - strand, within CA265_RS14650at 3685.928 kb on + strand, within CA265_RS14650at 3685.929 kb on - strand, within CA265_RS14650at 3685.970 kb on - strand, within CA265_RS14650at 3686.026 kb on + strand, within CA265_RS14650at 3686.026 kb on + strand, within CA265_RS14650at 3686.027 kb on - strand, within CA265_RS14650at 3686.027 kb on - strand, within CA265_RS14650at 3686.193 kb on + strandat 3686.194 kb on - strandat 3686.206 kb on + strandat 3686.224 kb on + strandat 3686.224 kb on + strandat 3686.228 kb on + strandat 3686.244 kb on - strandat 3686.247 kb on - strandat 3686.261 kb on + strandat 3686.330 kb on - strandat 3686.352 kb on - strandat 3686.395 kb on + strandat 3686.685 kb on + strandat 3686.687 kb on + strandat 3686.687 kb on + strandat 3686.749 kb on + strandat 3686.755 kb on + strandat 3686.755 kb on + strandat 3686.911 kb on + strand, within CA265_RS14655at 3686.914 kb on + strand, within CA265_RS14655at 3687.021 kb on + strand, within CA265_RS14655at 3687.174 kb on + strand, within CA265_RS14655at 3687.189 kb on + strand, within CA265_RS14655

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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3,685,716 + CA265_RS14645 0.61 -0.2
3,685,721 - CA265_RS14645 0.64 +0.4
3,685,743 + CA265_RS14645 0.74 -0.2
3,685,887 - CA265_RS14650 0.24 -1.1
3,685,928 + CA265_RS14650 0.34 -0.1
3,685,929 - CA265_RS14650 0.34 +0.6
3,685,970 - CA265_RS14650 0.44 +0.8
3,686,026 + CA265_RS14650 0.58 -1.5
3,686,026 + CA265_RS14650 0.58 -1.4
3,686,027 - CA265_RS14650 0.58 -1.7
3,686,027 - CA265_RS14650 0.58 -0.9
3,686,193 + -0.1
3,686,194 - -0.0
3,686,206 + -0.8
3,686,224 + +0.1
3,686,224 + -0.2
3,686,228 + +0.1
3,686,244 - -0.3
3,686,247 - -0.2
3,686,261 + +2.0
3,686,330 - -0.4
3,686,352 - +0.4
3,686,395 + +0.6
3,686,685 + -0.5
3,686,687 + -0.3
3,686,687 + +1.1
3,686,749 + -0.7
3,686,755 + -0.5
3,686,755 + -0.2
3,686,911 + CA265_RS14655 0.37 +0.3
3,686,914 + CA265_RS14655 0.37 -1.1
3,687,021 + CA265_RS14655 0.56 +0.4
3,687,174 + CA265_RS14655 0.84 -1.2
3,687,189 + CA265_RS14655 0.87 -2.1

Or see this region's nucleotide sequence