Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS11635

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS11630 and CA265_RS11635 are separated by 127 nucleotidesCA265_RS11635 and CA265_RS11640 are separated by 224 nucleotides CA265_RS11630: CA265_RS11630 - prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data), at 2,883,512 to 2,884,345 _RS11630 CA265_RS11635: CA265_RS11635 - chorismate mutase (EC 5.4.99.5); 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (from data), at 2,884,473 to 2,885,612 _RS11635 CA265_RS11640: CA265_RS11640 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,885,837 to 2,887,105 _RS11640 Position (kb) 2884 2885 2886Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2883.548 kb on - strandat 2883.589 kb on + strandat 2883.643 kb on - strand, within CA265_RS11630at 2883.669 kb on + strand, within CA265_RS11630at 2883.669 kb on + strand, within CA265_RS11630at 2883.714 kb on - strand, within CA265_RS11630at 2883.714 kb on - strand, within CA265_RS11630at 2883.781 kb on - strand, within CA265_RS11630at 2883.781 kb on - strand, within CA265_RS11630at 2883.814 kb on + strand, within CA265_RS11630at 2883.815 kb on - strand, within CA265_RS11630at 2883.824 kb on - strand, within CA265_RS11630at 2884.055 kb on - strand, within CA265_RS11630at 2884.147 kb on - strand, within CA265_RS11630at 2884.170 kb on + strand, within CA265_RS11630at 2884.170 kb on + strand, within CA265_RS11630at 2884.171 kb on - strand, within CA265_RS11630at 2884.171 kb on - strand, within CA265_RS11630at 2884.171 kb on - strand, within CA265_RS11630at 2884.171 kb on - strand, within CA265_RS11630at 2884.192 kb on + strand, within CA265_RS11630at 2884.193 kb on - strand, within CA265_RS11630at 2884.223 kb on + strand, within CA265_RS11630at 2884.240 kb on - strand, within CA265_RS11630at 2884.294 kb on + strandat 2884.323 kb on - strandat 2884.401 kb on - strandat 2885.305 kb on + strand, within CA265_RS11635at 2885.306 kb on - strandat 2885.335 kb on + strand, within CA265_RS11635at 2885.335 kb on + strand, within CA265_RS11635at 2885.335 kb on + strand, within CA265_RS11635at 2885.335 kb on + strand, within CA265_RS11635at 2885.412 kb on - strand, within CA265_RS11635at 2885.479 kb on + strand, within CA265_RS11635at 2885.594 kb on + strandat 2885.594 kb on + strandat 2885.610 kb on + strandat 2885.610 kb on + strandat 2885.701 kb on - strandat 2885.701 kb on - strandat 2885.735 kb on + strandat 2885.764 kb on + strandat 2885.767 kb on - strandat 2885.777 kb on + strandat 2885.780 kb on - strandat 2885.810 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
2,883,548 - -1.1
2,883,589 + -0.2
2,883,643 - CA265_RS11630 0.16 -3.5
2,883,669 + CA265_RS11630 0.19 -4.6
2,883,669 + CA265_RS11630 0.19 -1.3
2,883,714 - CA265_RS11630 0.24 -3.5
2,883,714 - CA265_RS11630 0.24 -2.1
2,883,781 - CA265_RS11630 0.32 -0.8
2,883,781 - CA265_RS11630 0.32 -2.2
2,883,814 + CA265_RS11630 0.36 -2.3
2,883,815 - CA265_RS11630 0.36 -4.3
2,883,824 - CA265_RS11630 0.37 -2.0
2,884,055 - CA265_RS11630 0.65 -1.0
2,884,147 - CA265_RS11630 0.76 -4.1
2,884,170 + CA265_RS11630 0.79 -1.3
2,884,170 + CA265_RS11630 0.79 -0.4
2,884,171 - CA265_RS11630 0.79 -3.0
2,884,171 - CA265_RS11630 0.79 -1.8
2,884,171 - CA265_RS11630 0.79 -1.3
2,884,171 - CA265_RS11630 0.79 -2.2
2,884,192 + CA265_RS11630 0.82 -0.6
2,884,193 - CA265_RS11630 0.82 -1.8
2,884,223 + CA265_RS11630 0.85 -2.8
2,884,240 - CA265_RS11630 0.87 -3.3
2,884,294 + -0.4
2,884,323 - -3.3
2,884,401 - -0.3
2,885,305 + CA265_RS11635 0.73 -0.6
2,885,306 - +0.4
2,885,335 + CA265_RS11635 0.76 -2.4
2,885,335 + CA265_RS11635 0.76 -1.5
2,885,335 + CA265_RS11635 0.76 -2.0
2,885,335 + CA265_RS11635 0.76 -2.6
2,885,412 - CA265_RS11635 0.82 +0.4
2,885,479 + CA265_RS11635 0.88 -2.6
2,885,594 + -1.6
2,885,594 + +0.3
2,885,610 + +0.2
2,885,610 + -0.0
2,885,701 - -1.4
2,885,701 - +0.4
2,885,735 + +0.2
2,885,764 + -0.7
2,885,767 - -1.7
2,885,777 + +0.4
2,885,780 - -3.2
2,885,810 + -0.2

Or see this region's nucleotide sequence