Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS11630 and CA265_RS11635 are separated by 127 nucleotides CA265_RS11635 and CA265_RS11640 are separated by 224 nucleotides
CA265_RS11630: CA265_RS11630 - prephenate and/or arogenate dehydratase (EC 4.2.1.51) (from data) , at 2,883,512 to 2,884,345
_RS11630
CA265_RS11635: CA265_RS11635 - chorismate mutase (EC 5.4.99.5); 3-deoxy-7-phosphoheptulonate synthase (EC 2.5.1.54) (from data) , at 2,884,473 to 2,885,612
_RS11635
CA265_RS11640: CA265_RS11640 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 2,885,837 to 2,887,105
_RS11640
Position (kb)
2884
2885
2886 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2883.548 kb on - strand at 2883.589 kb on + strand at 2883.643 kb on - strand, within CA265_RS11630 at 2883.669 kb on + strand, within CA265_RS11630 at 2883.669 kb on + strand, within CA265_RS11630 at 2883.714 kb on - strand, within CA265_RS11630 at 2883.714 kb on - strand, within CA265_RS11630 at 2883.781 kb on - strand, within CA265_RS11630 at 2883.781 kb on - strand, within CA265_RS11630 at 2883.814 kb on + strand, within CA265_RS11630 at 2883.815 kb on - strand, within CA265_RS11630 at 2883.824 kb on - strand, within CA265_RS11630 at 2884.055 kb on - strand, within CA265_RS11630 at 2884.147 kb on - strand, within CA265_RS11630 at 2884.170 kb on + strand, within CA265_RS11630 at 2884.170 kb on + strand, within CA265_RS11630 at 2884.171 kb on - strand, within CA265_RS11630 at 2884.171 kb on - strand, within CA265_RS11630 at 2884.171 kb on - strand, within CA265_RS11630 at 2884.171 kb on - strand, within CA265_RS11630 at 2884.192 kb on + strand, within CA265_RS11630 at 2884.193 kb on - strand, within CA265_RS11630 at 2884.223 kb on + strand, within CA265_RS11630 at 2884.240 kb on - strand, within CA265_RS11630 at 2884.294 kb on + strand at 2884.323 kb on - strand at 2884.401 kb on - strand at 2885.305 kb on + strand, within CA265_RS11635 at 2885.306 kb on - strand at 2885.335 kb on + strand, within CA265_RS11635 at 2885.335 kb on + strand, within CA265_RS11635 at 2885.335 kb on + strand, within CA265_RS11635 at 2885.335 kb on + strand, within CA265_RS11635 at 2885.412 kb on - strand, within CA265_RS11635 at 2885.479 kb on + strand, within CA265_RS11635 at 2885.594 kb on + strand at 2885.594 kb on + strand at 2885.610 kb on + strand at 2885.610 kb on + strand at 2885.701 kb on - strand at 2885.701 kb on - strand at 2885.735 kb on + strand at 2885.764 kb on + strand at 2885.767 kb on - strand at 2885.777 kb on + strand at 2885.780 kb on - strand at 2885.810 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 2,883,548 - -1.1 2,883,589 + -0.2 2,883,643 - CA265_RS11630 0.16 -3.5 2,883,669 + CA265_RS11630 0.19 -4.6 2,883,669 + CA265_RS11630 0.19 -1.3 2,883,714 - CA265_RS11630 0.24 -3.5 2,883,714 - CA265_RS11630 0.24 -2.1 2,883,781 - CA265_RS11630 0.32 -0.8 2,883,781 - CA265_RS11630 0.32 -2.2 2,883,814 + CA265_RS11630 0.36 -2.3 2,883,815 - CA265_RS11630 0.36 -4.3 2,883,824 - CA265_RS11630 0.37 -2.0 2,884,055 - CA265_RS11630 0.65 -1.0 2,884,147 - CA265_RS11630 0.76 -4.1 2,884,170 + CA265_RS11630 0.79 -1.3 2,884,170 + CA265_RS11630 0.79 -0.4 2,884,171 - CA265_RS11630 0.79 -3.0 2,884,171 - CA265_RS11630 0.79 -1.8 2,884,171 - CA265_RS11630 0.79 -1.3 2,884,171 - CA265_RS11630 0.79 -2.2 2,884,192 + CA265_RS11630 0.82 -0.6 2,884,193 - CA265_RS11630 0.82 -1.8 2,884,223 + CA265_RS11630 0.85 -2.8 2,884,240 - CA265_RS11630 0.87 -3.3 2,884,294 + -0.4 2,884,323 - -3.3 2,884,401 - -0.3 2,885,305 + CA265_RS11635 0.73 -0.6 2,885,306 - +0.4 2,885,335 + CA265_RS11635 0.76 -2.4 2,885,335 + CA265_RS11635 0.76 -1.5 2,885,335 + CA265_RS11635 0.76 -2.0 2,885,335 + CA265_RS11635 0.76 -2.6 2,885,412 - CA265_RS11635 0.82 +0.4 2,885,479 + CA265_RS11635 0.88 -2.6 2,885,594 + -1.6 2,885,594 + +0.3 2,885,610 + +0.2 2,885,610 + -0.0 2,885,701 - -1.4 2,885,701 - +0.4 2,885,735 + +0.2 2,885,764 + -0.7 2,885,767 - -1.7 2,885,777 + +0.4 2,885,780 - -3.2 2,885,810 + -0.2
Or see this region's nucleotide sequence