Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS07515

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCA265_RS07510 and CA265_RS07515 are separated by 986 nucleotidesCA265_RS07515 and CA265_RS07520 are separated by 167 nucleotides CA265_RS07510: CA265_RS07510 - ABC transporter, at 1,891,482 to 1,892,726 _RS07510 CA265_RS07515: CA265_RS07515 - pyridoxal phosphate-dependent aminotransferase, at 1,893,713 to 1,894,855 _RS07515 CA265_RS07520: CA265_RS07520 - cation diffusion facilitator family transporter, at 1,895,023 to 1,896,009 _RS07520 Position (kb) 1893 1894 1895Strain fitness (log2 ratio) -3 -2 -1 0 1at 1892.828 kb on - strandat 1892.913 kb on + strandat 1892.920 kb on + strandat 1892.922 kb on + strandat 1892.963 kb on + strandat 1893.051 kb on - strandat 1893.058 kb on - strandat 1893.059 kb on + strandat 1893.060 kb on - strandat 1893.101 kb on - strandat 1893.208 kb on + strandat 1893.237 kb on - strandat 1893.252 kb on - strandat 1893.276 kb on + strandat 1893.331 kb on + strandat 1893.332 kb on - strandat 1893.483 kb on - strandat 1893.524 kb on + strandat 1893.525 kb on - strandat 1893.552 kb on + strandat 1893.628 kb on + strandat 1893.629 kb on - strandat 1893.631 kb on - strandat 1893.637 kb on - strandat 1893.649 kb on + strandat 1893.649 kb on + strandat 1893.650 kb on - strandat 1893.658 kb on + strandat 1893.720 kb on - strandat 1893.728 kb on + strandat 1893.749 kb on + strandat 1893.750 kb on - strandat 1893.802 kb on + strandat 1893.803 kb on - strandat 1893.803 kb on - strandat 1893.836 kb on + strand, within CA265_RS07515at 1893.836 kb on + strand, within CA265_RS07515at 1893.837 kb on - strand, within CA265_RS07515at 1893.859 kb on - strand, within CA265_RS07515at 1894.136 kb on - strand, within CA265_RS07515at 1894.167 kb on + strand, within CA265_RS07515at 1894.167 kb on + strand, within CA265_RS07515at 1894.172 kb on + strand, within CA265_RS07515at 1894.214 kb on + strand, within CA265_RS07515at 1894.238 kb on - strand, within CA265_RS07515at 1894.238 kb on - strand, within CA265_RS07515at 1894.256 kb on - strand, within CA265_RS07515at 1894.309 kb on + strand, within CA265_RS07515at 1894.311 kb on + strand, within CA265_RS07515at 1894.312 kb on - strand, within CA265_RS07515at 1894.315 kb on + strand, within CA265_RS07515at 1894.315 kb on + strand, within CA265_RS07515at 1894.363 kb on + strand, within CA265_RS07515at 1894.364 kb on - strand, within CA265_RS07515at 1894.409 kb on + strand, within CA265_RS07515at 1894.481 kb on - strand, within CA265_RS07515at 1894.527 kb on + strand, within CA265_RS07515at 1894.644 kb on + strand, within CA265_RS07515at 1894.645 kb on - strand, within CA265_RS07515at 1894.645 kb on - strand, within CA265_RS07515at 1894.727 kb on - strand, within CA265_RS07515at 1894.859 kb on - strandat 1894.917 kb on + strandat 1894.969 kb on + strandat 1895.127 kb on - strand, within CA265_RS07520at 1895.150 kb on + strand, within CA265_RS07520at 1895.159 kb on + strand, within CA265_RS07520at 1895.159 kb on + strand, within CA265_RS07520at 1895.159 kb on + strand, within CA265_RS07520at 1895.159 kb on + strand, within CA265_RS07520at 1895.160 kb on - strand, within CA265_RS07520at 1895.180 kb on - strand, within CA265_RS07520at 1895.182 kb on - strand, within CA265_RS07520at 1895.188 kb on + strand, within CA265_RS07520at 1895.188 kb on + strand, within CA265_RS07520at 1895.189 kb on - strand, within CA265_RS07520at 1895.189 kb on - strand, within CA265_RS07520at 1895.197 kb on - strand, within CA265_RS07520at 1895.363 kb on + strand, within CA265_RS07520at 1895.482 kb on + strand, within CA265_RS07520at 1895.513 kb on + strand, within CA265_RS07520at 1895.532 kb on + strand, within CA265_RS07520at 1895.533 kb on - strand, within CA265_RS07520at 1895.552 kb on + strand, within CA265_RS07520at 1895.553 kb on - strand, within CA265_RS07520at 1895.575 kb on + strand, within CA265_RS07520at 1895.596 kb on - strand, within CA265_RS07520at 1895.729 kb on - strand, within CA265_RS07520at 1895.748 kb on - strand, within CA265_RS07520at 1895.855 kb on + strand, within CA265_RS07520

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
1,892,828 - -0.0
1,892,913 + +0.4
1,892,920 + -0.3
1,892,922 + -0.5
1,892,963 + +0.2
1,893,051 - -0.4
1,893,058 - -0.1
1,893,059 + -0.1
1,893,060 - -1.3
1,893,101 - +1.1
1,893,208 + -2.1
1,893,237 - +0.7
1,893,252 - +0.6
1,893,276 + -0.7
1,893,331 + +0.4
1,893,332 - -0.2
1,893,483 - -0.6
1,893,524 + +0.2
1,893,525 - +0.3
1,893,552 + +0.9
1,893,628 + +0.7
1,893,629 - +0.6
1,893,631 - -0.2
1,893,637 - -0.1
1,893,649 + +0.9
1,893,649 + -0.5
1,893,650 - +0.9
1,893,658 + +0.1
1,893,720 - +0.4
1,893,728 + -1.1
1,893,749 + -0.3
1,893,750 - -2.1
1,893,802 + -1.3
1,893,803 - -1.6
1,893,803 - -2.0
1,893,836 + CA265_RS07515 0.11 -0.9
1,893,836 + CA265_RS07515 0.11 -0.6
1,893,837 - CA265_RS07515 0.11 -0.5
1,893,859 - CA265_RS07515 0.13 -1.8
1,894,136 - CA265_RS07515 0.37 -0.8
1,894,167 + CA265_RS07515 0.40 -0.8
1,894,167 + CA265_RS07515 0.40 -0.5
1,894,172 + CA265_RS07515 0.40 -0.4
1,894,214 + CA265_RS07515 0.44 +0.5
1,894,238 - CA265_RS07515 0.46 -1.3
1,894,238 - CA265_RS07515 0.46 -2.6
1,894,256 - CA265_RS07515 0.48 -2.4
1,894,309 + CA265_RS07515 0.52 -2.2
1,894,311 + CA265_RS07515 0.52 -1.1
1,894,312 - CA265_RS07515 0.52 -0.5
1,894,315 + CA265_RS07515 0.53 -1.3
1,894,315 + CA265_RS07515 0.53 -1.8
1,894,363 + CA265_RS07515 0.57 -0.4
1,894,364 - CA265_RS07515 0.57 -2.9
1,894,409 + CA265_RS07515 0.61 +0.3
1,894,481 - CA265_RS07515 0.67 +0.9
1,894,527 + CA265_RS07515 0.71 -0.9
1,894,644 + CA265_RS07515 0.81 +0.4
1,894,645 - CA265_RS07515 0.82 -0.3
1,894,645 - CA265_RS07515 0.82 -0.7
1,894,727 - CA265_RS07515 0.89 +0.8
1,894,859 - -0.3
1,894,917 + -0.6
1,894,969 + +0.6
1,895,127 - CA265_RS07520 0.11 -0.2
1,895,150 + CA265_RS07520 0.13 -0.3
1,895,159 + CA265_RS07520 0.14 +0.2
1,895,159 + CA265_RS07520 0.14 -0.2
1,895,159 + CA265_RS07520 0.14 +0.3
1,895,159 + CA265_RS07520 0.14 +0.0
1,895,160 - CA265_RS07520 0.14 +0.3
1,895,180 - CA265_RS07520 0.16 -0.6
1,895,182 - CA265_RS07520 0.16 +0.6
1,895,188 + CA265_RS07520 0.17 -0.1
1,895,188 + CA265_RS07520 0.17 -0.8
1,895,189 - CA265_RS07520 0.17 +0.1
1,895,189 - CA265_RS07520 0.17 -0.2
1,895,197 - CA265_RS07520 0.18 -0.2
1,895,363 + CA265_RS07520 0.34 -0.1
1,895,482 + CA265_RS07520 0.47 -0.1
1,895,513 + CA265_RS07520 0.50 -0.2
1,895,532 + CA265_RS07520 0.52 -0.4
1,895,533 - CA265_RS07520 0.52 +0.8
1,895,552 + CA265_RS07520 0.54 -2.6
1,895,553 - CA265_RS07520 0.54 -0.0
1,895,575 + CA265_RS07520 0.56 -0.0
1,895,596 - CA265_RS07520 0.58 +0.5
1,895,729 - CA265_RS07520 0.72 -0.7
1,895,748 - CA265_RS07520 0.73 -0.7
1,895,855 + CA265_RS07520 0.84 +0.2

Or see this region's nucleotide sequence