Strain Fitness in Sinorhizobium meliloti 1021 around SMc04222

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04220 and SMc04221 are separated by 205 nucleotidesSMc04221 and SMc04222 overlap by 8 nucleotidesSMc04222 and SMc04223 are separated by 139 nucleotidesSMc04223 and SMc04224 are separated by 197 nucleotides SMc04220: SMc04220 - transcriptional regulator, at 2,047,050 to 2,047,367 SMc04220 SMc04221: SMc04221 - hypothetical protein, at 2,047,573 to 2,048,097 SMc04221 SMc04222: SMc04222 - hypothetical protein, at 2,048,090 to 2,048,380 SMc04222 SMc04223: SMc04223 - hypothetical protein, at 2,048,520 to 2,049,155 SMc04223 SMc04224: SMc04224 - hypothetical protein, at 2,049,353 to 2,049,703 SMc04224 Position (kb) 2048 2049Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2047.151 kb on + strand, within SMc04220at 2047.338 kb on + strandat 2047.339 kb on - strandat 2047.339 kb on - strandat 2047.340 kb on + strandat 2047.341 kb on - strandat 2047.532 kb on + strandat 2047.575 kb on - strandat 2047.814 kb on - strand, within SMc04221at 2047.919 kb on + strand, within SMc04221at 2047.922 kb on + strand, within SMc04221at 2048.015 kb on + strand, within SMc04221at 2048.015 kb on + strand, within SMc04221at 2048.904 kb on + strandat 2048.963 kb on + strand, within SMc04223at 2048.963 kb on + strand, within SMc04223at 2048.964 kb on - strand, within SMc04223at 2049.121 kb on + strandat 2049.147 kb on - strandat 2049.147 kb on - strandat 2049.147 kb on - strandat 2049.224 kb on + strandat 2049.224 kb on + strandat 2049.333 kb on + strandat 2049.333 kb on + strandat 2049.334 kb on - strandat 2049.334 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,047,151 + SMc04220 0.32 -1.0
2,047,338 + +0.3
2,047,339 - +1.5
2,047,339 - +0.8
2,047,340 + -1.7
2,047,341 - +0.6
2,047,532 + -1.0
2,047,575 - +0.3
2,047,814 - SMc04221 0.46 +1.1
2,047,919 + SMc04221 0.66 -0.1
2,047,922 + SMc04221 0.66 -0.3
2,048,015 + SMc04221 0.84 -0.7
2,048,015 + SMc04221 0.84 +1.0
2,048,904 + +1.4
2,048,963 + SMc04223 0.70 +0.5
2,048,963 + SMc04223 0.70 +0.9
2,048,964 - SMc04223 0.70 +1.6
2,049,121 + -0.5
2,049,147 - +0.7
2,049,147 - +0.4
2,049,147 - +4.0
2,049,224 + -1.3
2,049,224 + +0.6
2,049,333 + -2.9
2,049,333 + +0.6
2,049,334 - -0.4
2,049,334 - +1.2

Or see this region's nucleotide sequence