Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04220 and SMc04221 are separated by 205 nucleotides SMc04221 and SMc04222 overlap by 8 nucleotides SMc04222 and SMc04223 are separated by 139 nucleotides SMc04223 and SMc04224 are separated by 197 nucleotides
SMc04220: SMc04220 - transcriptional regulator, at 2,047,050 to 2,047,367
SMc04220
SMc04221: SMc04221 - hypothetical protein, at 2,047,573 to 2,048,097
SMc04221
SMc04222: SMc04222 - hypothetical protein, at 2,048,090 to 2,048,380
SMc04222
SMc04223: SMc04223 - hypothetical protein, at 2,048,520 to 2,049,155
SMc04223
SMc04224: SMc04224 - hypothetical protein, at 2,049,353 to 2,049,703
SMc04224
Position (kb)
2048
2049 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2047.151 kb on + strand, within SMc04220 at 2047.338 kb on + strand at 2047.339 kb on - strand at 2047.339 kb on - strand at 2047.340 kb on + strand at 2047.341 kb on - strand at 2047.532 kb on + strand at 2047.575 kb on - strand at 2047.814 kb on - strand, within SMc04221 at 2047.919 kb on + strand, within SMc04221 at 2047.922 kb on + strand, within SMc04221 at 2048.015 kb on + strand, within SMc04221 at 2048.015 kb on + strand, within SMc04221 at 2048.904 kb on + strand at 2048.963 kb on + strand, within SMc04223 at 2048.963 kb on + strand, within SMc04223 at 2048.964 kb on - strand, within SMc04223 at 2049.121 kb on + strand at 2049.147 kb on - strand at 2049.147 kb on - strand at 2049.147 kb on - strand at 2049.224 kb on + strand at 2049.224 kb on + strand at 2049.333 kb on + strand at 2049.333 kb on + strand at 2049.334 kb on - strand at 2049.334 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 2,047,151 + SMc04220 0.32 -1.0 2,047,338 + +0.3 2,047,339 - +1.5 2,047,339 - +0.8 2,047,340 + -1.7 2,047,341 - +0.6 2,047,532 + -1.0 2,047,575 - +0.3 2,047,814 - SMc04221 0.46 +1.1 2,047,919 + SMc04221 0.66 -0.1 2,047,922 + SMc04221 0.66 -0.3 2,048,015 + SMc04221 0.84 -0.7 2,048,015 + SMc04221 0.84 +1.0 2,048,904 + +1.4 2,048,963 + SMc04223 0.70 +0.5 2,048,963 + SMc04223 0.70 +0.9 2,048,964 - SMc04223 0.70 +1.6 2,049,121 + -0.5 2,049,147 - +0.7 2,049,147 - +0.4 2,049,147 - +4.0 2,049,224 + -1.3 2,049,224 + +0.6 2,049,333 + -2.9 2,049,333 + +0.6 2,049,334 - -0.4 2,049,334 - +1.2
Or see this region's nucleotide sequence