Strain Fitness in Sinorhizobium meliloti 1021 around SMc04133

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04135 and SMc04134 are separated by 194 nucleotidesSMc04134 and SMc04133 are separated by 122 nucleotidesSMc04133 and SMc04132 are separated by 3 nucleotides SMc04135: SMc04135 - periplasmic binding ABC transporter protein, at 136,542 to 137,825 SMc04135 SMc04134: SMc04134 - transcriptional regulator, at 138,020 to 138,697 SMc04134 SMc04133: SMc04133 - oxidoreductase, at 138,820 to 139,968 SMc04133 SMc04132: SMc04132 - hypothetical protein, at 139,972 to 141,135 SMc04132 Position (kb) 138 139 140Strain fitness (log2 ratio) -2 -1 0 1 2 3at 137.942 kb on - strandat 138.156 kb on + strand, within SMc04134at 138.222 kb on - strand, within SMc04134at 138.269 kb on + strand, within SMc04134at 138.269 kb on + strand, within SMc04134at 138.472 kb on - strand, within SMc04134at 138.548 kb on + strand, within SMc04134at 138.572 kb on + strand, within SMc04134at 138.594 kb on - strand, within SMc04134at 138.761 kb on + strandat 138.836 kb on + strandat 138.839 kb on + strandat 138.839 kb on + strandat 138.839 kb on + strandat 138.839 kb on + strandat 138.840 kb on - strandat 138.840 kb on - strandat 138.840 kb on - strandat 138.840 kb on - strandat 138.840 kb on - strandat 139.011 kb on + strand, within SMc04133at 139.012 kb on - strand, within SMc04133at 139.012 kb on - strand, within SMc04133at 139.012 kb on - strand, within SMc04133at 139.142 kb on - strand, within SMc04133at 139.436 kb on - strand, within SMc04133at 139.436 kb on - strand, within SMc04133at 139.529 kb on - strand, within SMc04133at 139.593 kb on + strand, within SMc04133at 139.594 kb on - strand, within SMc04133at 139.762 kb on + strand, within SMc04133at 140.015 kb on - strandat 140.023 kb on - strandat 140.217 kb on + strand, within SMc04132at 140.383 kb on + strand, within SMc04132at 140.384 kb on - strand, within SMc04132at 140.479 kb on + strand, within SMc04132at 140.479 kb on + strand, within SMc04132at 140.479 kb on + strand, within SMc04132at 140.480 kb on - strand, within SMc04132at 140.480 kb on - strand, within SMc04132at 140.480 kb on - strand, within SMc04132at 140.480 kb on - strand, within SMc04132at 140.491 kb on + strand, within SMc04132at 140.491 kb on + strand, within SMc04132at 140.492 kb on - strand, within SMc04132at 140.492 kb on - strand, within SMc04132at 140.492 kb on - strand, within SMc04132at 140.726 kb on - strand, within SMc04132at 140.746 kb on + strand, within SMc04132at 140.747 kb on - strand, within SMc04132at 140.747 kb on - strand, within SMc04132at 140.936 kb on - strand, within SMc04132

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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137,942 - -2.0
138,156 + SMc04134 0.20 +0.1
138,222 - SMc04134 0.30 -0.7
138,269 + SMc04134 0.37 -1.5
138,269 + SMc04134 0.37 +0.2
138,472 - SMc04134 0.67 -0.7
138,548 + SMc04134 0.78 -1.5
138,572 + SMc04134 0.81 +0.1
138,594 - SMc04134 0.85 +0.2
138,761 + -1.8
138,836 + -0.1
138,839 + -0.5
138,839 + -2.3
138,839 + +0.3
138,839 + +0.3
138,840 - -0.8
138,840 - +0.4
138,840 - -2.0
138,840 - +0.4
138,840 - +1.7
139,011 + SMc04133 0.17 -1.9
139,012 - SMc04133 0.17 -0.9
139,012 - SMc04133 0.17 -1.9
139,012 - SMc04133 0.17 +1.1
139,142 - SMc04133 0.28 +2.9
139,436 - SMc04133 0.54 -1.5
139,436 - SMc04133 0.54 -1.4
139,529 - SMc04133 0.62 +2.4
139,593 + SMc04133 0.67 +0.7
139,594 - SMc04133 0.67 -1.3
139,762 + SMc04133 0.82 -1.1
140,015 - -1.2
140,023 - +1.0
140,217 + SMc04132 0.21 +0.0
140,383 + SMc04132 0.35 +2.2
140,384 - SMc04132 0.35 +0.1
140,479 + SMc04132 0.44 -1.9
140,479 + SMc04132 0.44 +0.6
140,479 + SMc04132 0.44 -2.5
140,480 - SMc04132 0.44 +0.1
140,480 - SMc04132 0.44 -2.4
140,480 - SMc04132 0.44 -1.2
140,480 - SMc04132 0.44 +0.0
140,491 + SMc04132 0.45 -1.6
140,491 + SMc04132 0.45 +1.9
140,492 - SMc04132 0.45 -0.4
140,492 - SMc04132 0.45 -0.5
140,492 - SMc04132 0.45 -1.0
140,726 - SMc04132 0.65 -0.1
140,746 + SMc04132 0.66 -0.8
140,747 - SMc04132 0.67 +0.2
140,747 - SMc04132 0.67 +0.1
140,936 - SMc04132 0.83 -0.9

Or see this region's nucleotide sequence