Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04058 and SMc04059 are separated by 210 nucleotides SMc04059 and SMc04460 are separated by 233 nucleotides
SMc04058: SMc04058 - hypothetical protein, at 3,062,692 to 3,063,570
SMc04058
SMc04059: SMc04059 - hypothetical protein, at 3,063,781 to 3,065,013
SMc04059
SMc04460: SMc04460 - glycogen phosphorylase, at 3,065,247 to 3,067,712
SMc04460
Position (kb)
3063
3064
3065
3066 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3063.091 kb on + strand, within SMc04058 at 3063.114 kb on + strand, within SMc04058 at 3063.115 kb on - strand, within SMc04058 at 3063.175 kb on + strand, within SMc04058 at 3063.301 kb on + strand, within SMc04058 at 3063.435 kb on + strand, within SMc04058 at 3063.435 kb on + strand, within SMc04058 at 3063.435 kb on + strand, within SMc04058 at 3063.585 kb on + strand at 3063.585 kb on + strand at 3063.585 kb on + strand at 3063.585 kb on + strand at 3063.586 kb on - strand at 3063.586 kb on - strand at 3063.586 kb on - strand at 3063.586 kb on - strand at 3063.586 kb on - strand at 3063.586 kb on - strand at 3063.586 kb on - strand at 3063.586 kb on - strand at 3063.586 kb on - strand at 3063.727 kb on + strand at 3063.728 kb on - strand at 3063.728 kb on - strand at 3063.768 kb on - strand at 3063.768 kb on - strand at 3064.110 kb on + strand, within SMc04059 at 3064.110 kb on + strand, within SMc04059 at 3064.110 kb on + strand, within SMc04059 at 3064.110 kb on + strand, within SMc04059 at 3064.110 kb on + strand, within SMc04059 at 3064.111 kb on - strand, within SMc04059 at 3064.297 kb on + strand, within SMc04059 at 3064.351 kb on - strand, within SMc04059 at 3064.426 kb on + strand, within SMc04059 at 3064.426 kb on + strand, within SMc04059 at 3064.426 kb on + strand, within SMc04059 at 3064.426 kb on + strand, within SMc04059 at 3064.426 kb on + strand, within SMc04059 at 3064.426 kb on + strand, within SMc04059 at 3064.427 kb on - strand, within SMc04059 at 3064.427 kb on - strand, within SMc04059 at 3064.464 kb on + strand, within SMc04059 at 3064.531 kb on + strand, within SMc04059 at 3064.720 kb on + strand, within SMc04059 at 3064.721 kb on - strand, within SMc04059 at 3064.756 kb on + strand, within SMc04059 at 3064.756 kb on + strand, within SMc04059 at 3064.756 kb on + strand, within SMc04059 at 3064.906 kb on - strand at 3064.921 kb on + strand at 3064.921 kb on + strand at 3064.921 kb on + strand at 3064.922 kb on - strand at 3065.131 kb on + strand at 3065.140 kb on + strand at 3065.141 kb on - strand at 3065.177 kb on - strand at 3065.234 kb on + strand at 3065.235 kb on - strand at 3065.235 kb on - strand at 3065.457 kb on + strand at 3065.457 kb on + strand at 3065.481 kb on + strand at 3065.482 kb on - strand at 3065.482 kb on - strand at 3065.484 kb on + strand at 3065.484 kb on + strand at 3065.484 kb on + strand at 3065.484 kb on + strand at 3065.484 kb on + strand at 3065.484 kb on + strand at 3065.485 kb on - strand at 3065.485 kb on - strand at 3065.485 kb on - strand at 3065.513 kb on + strand, within SMc04460 at 3065.514 kb on - strand, within SMc04460 at 3065.697 kb on + strand, within SMc04460 at 3065.698 kb on - strand, within SMc04460 at 3065.710 kb on + strand, within SMc04460 at 3065.710 kb on + strand, within SMc04460 at 3065.711 kb on - strand, within SMc04460 at 3065.711 kb on - strand, within SMc04460 at 3065.711 kb on - strand, within SMc04460 at 3065.711 kb on - strand, within SMc04460 at 3065.715 kb on + strand, within SMc04460 at 3065.715 kb on + strand, within SMc04460 at 3065.716 kb on - strand, within SMc04460 at 3065.716 kb on - strand, within SMc04460 at 3065.827 kb on - strand, within SMc04460 at 3065.886 kb on + strand, within SMc04460 at 3065.886 kb on + strand, within SMc04460 at 3065.886 kb on + strand, within SMc04460 at 3065.887 kb on - strand, within SMc04460 at 3065.887 kb on - strand, within SMc04460
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 3,063,091 + SMc04058 0.45 +0.4 3,063,114 + SMc04058 0.48 +0.7 3,063,115 - SMc04058 0.48 -0.7 3,063,175 + SMc04058 0.55 -1.3 3,063,301 + SMc04058 0.69 -1.8 3,063,435 + SMc04058 0.85 -0.5 3,063,435 + SMc04058 0.85 +1.1 3,063,435 + SMc04058 0.85 +0.1 3,063,585 + -1.8 3,063,585 + +0.0 3,063,585 + +1.5 3,063,585 + -3.0 3,063,586 - +0.2 3,063,586 - +2.9 3,063,586 - -1.3 3,063,586 - -0.8 3,063,586 - -0.0 3,063,586 - -1.0 3,063,586 - +0.9 3,063,586 - -0.4 3,063,586 - +0.5 3,063,727 + +1.7 3,063,728 - -1.4 3,063,728 - +2.6 3,063,768 - -0.7 3,063,768 - -0.9 3,064,110 + SMc04059 0.27 +0.2 3,064,110 + SMc04059 0.27 -0.0 3,064,110 + SMc04059 0.27 +4.0 3,064,110 + SMc04059 0.27 -2.0 3,064,110 + SMc04059 0.27 -1.0 3,064,111 - SMc04059 0.27 +0.0 3,064,297 + SMc04059 0.42 +2.2 3,064,351 - SMc04059 0.46 -0.1 3,064,426 + SMc04059 0.52 -0.2 3,064,426 + SMc04059 0.52 +0.0 3,064,426 + SMc04059 0.52 +0.6 3,064,426 + SMc04059 0.52 -1.5 3,064,426 + SMc04059 0.52 +0.1 3,064,426 + SMc04059 0.52 -0.4 3,064,427 - SMc04059 0.52 +1.5 3,064,427 - SMc04059 0.52 -0.5 3,064,464 + SMc04059 0.55 +0.9 3,064,531 + SMc04059 0.61 -0.2 3,064,720 + SMc04059 0.76 -0.4 3,064,721 - SMc04059 0.76 +0.2 3,064,756 + SMc04059 0.79 +1.5 3,064,756 + SMc04059 0.79 -0.1 3,064,756 + SMc04059 0.79 -0.1 3,064,906 - +2.0 3,064,921 + +0.3 3,064,921 + +0.4 3,064,921 + -0.4 3,064,922 - +0.4 3,065,131 + -1.4 3,065,140 + +0.0 3,065,141 - -1.0 3,065,177 - +1.0 3,065,234 + -0.4 3,065,235 - -1.3 3,065,235 - +1.2 3,065,457 + +2.5 3,065,457 + +1.0 3,065,481 + -0.5 3,065,482 - +0.7 3,065,482 - +0.4 3,065,484 + +0.8 3,065,484 + +1.3 3,065,484 + +1.1 3,065,484 + +4.0 3,065,484 + +0.8 3,065,484 + -1.6 3,065,485 - +0.4 3,065,485 - -3.9 3,065,485 - -0.5 3,065,513 + SMc04460 0.11 -1.0 3,065,514 - SMc04460 0.11 +0.5 3,065,697 + SMc04460 0.18 +1.8 3,065,698 - SMc04460 0.18 +0.8 3,065,710 + SMc04460 0.19 +0.5 3,065,710 + SMc04460 0.19 +1.0 3,065,711 - SMc04460 0.19 -0.2 3,065,711 - SMc04460 0.19 -1.5 3,065,711 - SMc04460 0.19 +2.7 3,065,711 - SMc04460 0.19 +0.2 3,065,715 + SMc04460 0.19 +0.5 3,065,715 + SMc04460 0.19 +0.8 3,065,716 - SMc04460 0.19 -0.3 3,065,716 - SMc04460 0.19 +0.4 3,065,827 - SMc04460 0.24 -1.3 3,065,886 + SMc04460 0.26 +2.5 3,065,886 + SMc04460 0.26 +0.1 3,065,886 + SMc04460 0.26 +1.1 3,065,887 - SMc04460 0.26 +0.2 3,065,887 - SMc04460 0.26 -0.1
Or see this region's nucleotide sequence