Strain Fitness in Sinorhizobium meliloti 1021 around SMc04053

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc04051 and SMc04052 are separated by 149 nucleotidesSMc04052 and SMc04053 are separated by 152 nucleotidesSMc04053 and SMc04054 are separated by 205 nucleotides SMc04051: SMc04051 - RNA polymerase sigma-E factor (sigma-24) protein, at 3,055,204 to 3,055,740 SMc04051 SMc04052: SMc04052 - transcriptional regulator, at 3,055,890 to 3,056,336 SMc04052 SMc04053: SMc04053 - hypothetical protein, at 3,056,489 to 3,056,962 SMc04053 SMc04054: SMc04054 - hypothetical protein, at 3,057,168 to 3,057,929 SMc04054 Position (kb) 3056 3057Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3055.632 kb on + strand, within SMc04051at 3055.691 kb on + strandat 3055.732 kb on - strandat 3055.851 kb on - strandat 3056.205 kb on - strand, within SMc04052at 3056.316 kb on + strandat 3056.337 kb on - strandat 3056.337 kb on - strandat 3056.496 kb on + strandat 3056.497 kb on - strandat 3056.717 kb on + strand, within SMc04053at 3056.725 kb on + strand, within SMc04053at 3056.752 kb on + strand, within SMc04053at 3056.752 kb on + strand, within SMc04053at 3056.752 kb on + strand, within SMc04053at 3056.753 kb on - strand, within SMc04053at 3056.753 kb on - strand, within SMc04053at 3056.753 kb on - strand, within SMc04053at 3056.753 kb on - strand, within SMc04053at 3056.753 kb on - strand, within SMc04053at 3056.762 kb on + strand, within SMc04053at 3056.763 kb on - strand, within SMc04053at 3056.774 kb on - strand, within SMc04053at 3056.775 kb on + strand, within SMc04053at 3056.776 kb on - strand, within SMc04053at 3056.776 kb on - strand, within SMc04053at 3056.776 kb on - strand, within SMc04053at 3056.857 kb on + strand, within SMc04053at 3056.858 kb on - strand, within SMc04053at 3056.862 kb on + strand, within SMc04053at 3056.862 kb on + strand, within SMc04053at 3056.862 kb on + strand, within SMc04053at 3056.893 kb on + strand, within SMc04053at 3057.009 kb on + strandat 3057.014 kb on + strandat 3057.015 kb on - strandat 3057.015 kb on - strandat 3057.015 kb on - strandat 3057.016 kb on + strandat 3057.189 kb on + strandat 3057.190 kb on - strandat 3057.231 kb on + strandat 3057.232 kb on - strandat 3057.286 kb on - strand, within SMc04054at 3057.317 kb on - strand, within SMc04054at 3057.627 kb on + strand, within SMc04054at 3057.627 kb on + strand, within SMc04054at 3057.688 kb on - strand, within SMc04054at 3057.705 kb on - strand, within SMc04054at 3057.768 kb on + strand, within SMc04054at 3057.769 kb on - strand, within SMc04054at 3057.769 kb on - strand, within SMc04054at 3057.771 kb on + strand, within SMc04054at 3057.771 kb on + strand, within SMc04054at 3057.772 kb on - strand, within SMc04054at 3057.772 kb on - strand, within SMc04054

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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3,055,632 + SMc04051 0.80 +0.2
3,055,691 + +0.6
3,055,732 - +1.4
3,055,851 - -0.0
3,056,205 - SMc04052 0.70 -3.5
3,056,316 + -0.4
3,056,337 - -1.8
3,056,337 - +2.7
3,056,496 + +2.0
3,056,497 - +1.0
3,056,717 + SMc04053 0.48 -1.0
3,056,725 + SMc04053 0.50 -2.5
3,056,752 + SMc04053 0.55 +0.3
3,056,752 + SMc04053 0.55 -0.3
3,056,752 + SMc04053 0.55 +0.6
3,056,753 - SMc04053 0.56 -0.3
3,056,753 - SMc04053 0.56 -1.4
3,056,753 - SMc04053 0.56 -0.3
3,056,753 - SMc04053 0.56 +1.1
3,056,753 - SMc04053 0.56 -0.2
3,056,762 + SMc04053 0.58 -0.8
3,056,763 - SMc04053 0.58 +0.6
3,056,774 - SMc04053 0.60 -1.5
3,056,775 + SMc04053 0.60 +1.0
3,056,776 - SMc04053 0.61 -3.3
3,056,776 - SMc04053 0.61 +0.6
3,056,776 - SMc04053 0.61 -0.3
3,056,857 + SMc04053 0.78 +0.0
3,056,858 - SMc04053 0.78 +0.0
3,056,862 + SMc04053 0.79 -0.3
3,056,862 + SMc04053 0.79 -1.2
3,056,862 + SMc04053 0.79 -0.4
3,056,893 + SMc04053 0.85 -1.4
3,057,009 + -0.7
3,057,014 + -1.0
3,057,015 - -1.6
3,057,015 - +1.4
3,057,015 - -0.2
3,057,016 + -0.5
3,057,189 + -0.3
3,057,190 - +0.6
3,057,231 + -0.1
3,057,232 - -1.1
3,057,286 - SMc04054 0.15 +0.7
3,057,317 - SMc04054 0.20 +0.3
3,057,627 + SMc04054 0.60 -0.7
3,057,627 + SMc04054 0.60 -0.7
3,057,688 - SMc04054 0.68 +1.0
3,057,705 - SMc04054 0.70 +0.2
3,057,768 + SMc04054 0.79 -1.3
3,057,769 - SMc04054 0.79 -0.5
3,057,769 - SMc04054 0.79 +0.0
3,057,771 + SMc04054 0.79 -0.0
3,057,771 + SMc04054 0.79 +0.7
3,057,772 - SMc04054 0.79 +1.7
3,057,772 - SMc04054 0.79 +4.6

Or see this region's nucleotide sequence