Strain Fitness in Sinorhizobium meliloti 1021 around SMc03865

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03864 and SMc03865 are separated by 69 nucleotidesSMc03865 and SMc03866 are separated by 50 nucleotides SMc03864: SMc03864 - amino acid-binding periplasmic (signal peptide) ABC transporter protein, at 3,527,921 to 3,528,730 SMc03864 SMc03865: SMc03865 - amino-acid transport system permease ABC transporter protein, at 3,528,800 to 3,529,621 SMc03865 SMc03866: SMc03866 - ABC transporter ATP-binding protein, at 3,529,672 to 3,531,513 SMc03866 Position (kb) 3528 3529 3530Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3527.875 kb on + strandat 3528.278 kb on + strand, within SMc03864at 3528.278 kb on + strand, within SMc03864at 3528.279 kb on - strand, within SMc03864at 3528.279 kb on - strand, within SMc03864at 3528.280 kb on + strand, within SMc03864at 3528.281 kb on - strand, within SMc03864at 3528.398 kb on + strand, within SMc03864at 3528.399 kb on - strand, within SMc03864at 3528.410 kb on + strand, within SMc03864at 3528.539 kb on + strand, within SMc03864at 3528.539 kb on + strand, within SMc03864at 3528.540 kb on - strand, within SMc03864at 3528.745 kb on + strandat 3528.911 kb on - strand, within SMc03865at 3528.911 kb on - strand, within SMc03865at 3528.911 kb on - strand, within SMc03865at 3528.924 kb on + strand, within SMc03865at 3528.925 kb on - strand, within SMc03865at 3528.925 kb on - strand, within SMc03865at 3529.064 kb on + strand, within SMc03865at 3529.065 kb on - strand, within SMc03865at 3529.065 kb on - strand, within SMc03865at 3529.087 kb on - strand, within SMc03865at 3529.109 kb on + strand, within SMc03865at 3529.109 kb on + strand, within SMc03865at 3529.110 kb on - strand, within SMc03865at 3529.347 kb on - strand, within SMc03865at 3529.347 kb on - strand, within SMc03865at 3529.490 kb on + strand, within SMc03865at 3529.490 kb on + strand, within SMc03865at 3529.490 kb on + strand, within SMc03865at 3529.491 kb on - strand, within SMc03865at 3529.491 kb on - strand, within SMc03865at 3529.491 kb on - strand, within SMc03865at 3529.524 kb on - strand, within SMc03865at 3529.524 kb on - strand, within SMc03865at 3529.524 kb on - strand, within SMc03865at 3529.538 kb on + strand, within SMc03865at 3529.539 kb on - strandat 3529.539 kb on - strandat 3529.544 kb on + strandat 3529.545 kb on - strandat 3529.545 kb on - strandat 3529.619 kb on + strandat 3529.620 kb on - strandat 3529.650 kb on + strandat 3529.650 kb on + strandat 3530.354 kb on + strand, within SMc03866at 3530.354 kb on + strand, within SMc03866at 3530.355 kb on - strand, within SMc03866at 3530.417 kb on + strand, within SMc03866at 3530.491 kb on + strand, within SMc03866at 3530.491 kb on + strand, within SMc03866at 3530.492 kb on - strand, within SMc03866

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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3,527,875 + +0.1
3,528,278 + SMc03864 0.44 -0.1
3,528,278 + SMc03864 0.44 +3.1
3,528,279 - SMc03864 0.44 -2.8
3,528,279 - SMc03864 0.44 +0.1
3,528,280 + SMc03864 0.44 +0.2
3,528,281 - SMc03864 0.44 +0.2
3,528,398 + SMc03864 0.59 +0.7
3,528,399 - SMc03864 0.59 -2.5
3,528,410 + SMc03864 0.60 +0.1
3,528,539 + SMc03864 0.76 -2.9
3,528,539 + SMc03864 0.76 -0.1
3,528,540 - SMc03864 0.76 -1.2
3,528,745 + -0.6
3,528,911 - SMc03865 0.14 -4.2
3,528,911 - SMc03865 0.14 -1.5
3,528,911 - SMc03865 0.14 -0.8
3,528,924 + SMc03865 0.15 -0.9
3,528,925 - SMc03865 0.15 -1.6
3,528,925 - SMc03865 0.15 -0.0
3,529,064 + SMc03865 0.32 -0.5
3,529,065 - SMc03865 0.32 -0.1
3,529,065 - SMc03865 0.32 -2.6
3,529,087 - SMc03865 0.35 -1.8
3,529,109 + SMc03865 0.38 +1.5
3,529,109 + SMc03865 0.38 -0.1
3,529,110 - SMc03865 0.38 +0.1
3,529,347 - SMc03865 0.67 +0.9
3,529,347 - SMc03865 0.67 -2.0
3,529,490 + SMc03865 0.84 +0.7
3,529,490 + SMc03865 0.84 -1.6
3,529,490 + SMc03865 0.84 +1.0
3,529,491 - SMc03865 0.84 -1.5
3,529,491 - SMc03865 0.84 +0.3
3,529,491 - SMc03865 0.84 -0.4
3,529,524 - SMc03865 0.88 +3.1
3,529,524 - SMc03865 0.88 -0.5
3,529,524 - SMc03865 0.88 +0.7
3,529,538 + SMc03865 0.90 -1.5
3,529,539 - -1.2
3,529,539 - +0.8
3,529,544 + +0.2
3,529,545 - -0.6
3,529,545 - -0.3
3,529,619 + +0.6
3,529,620 - -1.5
3,529,650 + -1.6
3,529,650 + -1.7
3,530,354 + SMc03866 0.37 -0.6
3,530,354 + SMc03866 0.37 -0.7
3,530,355 - SMc03866 0.37 -0.9
3,530,417 + SMc03866 0.40 -1.8
3,530,491 + SMc03866 0.44 -2.3
3,530,491 + SMc03866 0.44 -0.3
3,530,492 - SMc03866 0.45 -1.3

Or see this region's nucleotide sequence