Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04109 and SMc02820 are separated by 130 nucleotides SMc02820 and SMc02821 are separated by 58 nucleotides
SMc04109: SMc04109 - response regulator protein, at 164,746 to 166,032
SMc04109
SMc02820: SMc02820 - pilus assembly protein, at 166,163 to 167,563
SMc02820
SMc02821: SMc02821 - hypothetical protein, at 167,622 to 168,632
SMc02821
Position (kb) 166
167
168 Strain fitness (log2 ratio) -1
0
1
2
3 at 165.186 kb on + strand, within SMc04109 at 165.975 kb on - strand at 166.038 kb on + strand at 166.183 kb on - strand at 166.295 kb on + strand at 166.295 kb on + strand at 166.408 kb on + strand, within SMc02820 at 166.408 kb on + strand, within SMc02820 at 166.657 kb on - strand, within SMc02820 at 166.938 kb on - strand, within SMc02820 at 166.940 kb on - strand, within SMc02820 at 166.963 kb on + strand, within SMc02820 at 167.253 kb on - strand, within SMc02820 at 167.254 kb on + strand, within SMc02820 at 167.255 kb on - strand, within SMc02820 at 167.255 kb on - strand, within SMc02820 at 167.561 kb on + strand at 167.561 kb on + strand at 167.570 kb on - strand at 167.632 kb on + strand at 167.633 kb on - strand at 167.691 kb on + strand at 167.692 kb on - strand at 167.692 kb on - strand at 167.950 kb on - strand, within SMc02821 at 168.462 kb on - strand, within SMc02821 at 168.462 kb on - strand, within SMc02821 at 168.462 kb on - strand, within SMc02821 at 168.462 kb on - strand, within SMc02821 at 168.501 kb on + strand, within SMc02821 at 168.502 kb on - strand, within SMc02821
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 165,186 + SMc04109 0.34 -0.4 165,975 - +0.0 166,038 + +1.6 166,183 - +1.6 166,295 + -0.5 166,295 + +1.0 166,408 + SMc02820 0.17 -0.9 166,408 + SMc02820 0.17 -1.1 166,657 - SMc02820 0.35 -1.4 166,938 - SMc02820 0.55 -1.4 166,940 - SMc02820 0.55 -0.2 166,963 + SMc02820 0.57 -1.5 167,253 - SMc02820 0.78 -1.4 167,254 + SMc02820 0.78 +0.8 167,255 - SMc02820 0.78 +0.0 167,255 - SMc02820 0.78 +0.4 167,561 + -0.4 167,561 + +0.2 167,570 - +1.2 167,632 + -0.7 167,633 - -0.2 167,691 + +0.1 167,692 - -0.5 167,692 - -0.4 167,950 - SMc02821 0.32 +1.5 168,462 - SMc02821 0.83 +3.0 168,462 - SMc02821 0.83 -1.4 168,462 - SMc02821 0.83 +0.5 168,462 - SMc02821 0.83 -0.1 168,501 + SMc02821 0.87 +0.4 168,502 - SMc02821 0.87 +0.2
Or see this region's nucleotide sequence