Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02398 and SMc05004 overlap by 73 nucleotides SMc05004 and SMc02399 overlap by 480 nucleotides SMc02399 and SMc02400 are separated by 22 nucleotides SMc02400 and SMc02401 are separated by 213 nucleotides SMc02401 and SMc02403 are separated by 179 nucleotides
SMc02398: SMc02398 - transposase ISRM11/ISRM2011-2, at 1,150,950 to 1,151,357
SMc02398
SMc05004: SMc05004 - hypothetical protein, at 1,151,285 to 1,151,770
SMc05004
SMc02399: SMc02399 - transposase ISRM11/ISRM2011-2, at 1,151,291 to 1,151,896
SMc02399
SMc02400: SMc02400 - outer membrane protein, at 1,151,919 to 1,152,968
SMc02400
SMc02401: SMc02401 - hypothetical protein, at 1,153,182 to 1,153,658
SMc02401
SMc02403: SMc02403 - murein transglycosylase, at 1,153,838 to 1,155,883
SMc02403
Position (kb)
1151
1152
1153 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1151.898 kb on + strand at 1151.902 kb on + strand at 1151.920 kb on + strand at 1151.920 kb on + strand at 1151.921 kb on - strand at 1152.112 kb on + strand, within SMc02400 at 1152.113 kb on - strand, within SMc02400 at 1152.160 kb on + strand, within SMc02400 at 1152.301 kb on + strand, within SMc02400 at 1152.302 kb on - strand, within SMc02400 at 1152.302 kb on - strand, within SMc02400 at 1152.386 kb on + strand, within SMc02400 at 1152.386 kb on + strand, within SMc02400 at 1152.440 kb on + strand, within SMc02400 at 1152.440 kb on + strand, within SMc02400 at 1152.440 kb on + strand, within SMc02400 at 1152.441 kb on - strand, within SMc02400 at 1152.441 kb on - strand, within SMc02400 at 1152.442 kb on + strand, within SMc02400 at 1152.443 kb on - strand, within SMc02400 at 1152.517 kb on + strand, within SMc02400 at 1152.517 kb on + strand, within SMc02400 at 1152.518 kb on - strand, within SMc02400 at 1152.518 kb on - strand, within SMc02400 at 1152.554 kb on - strand, within SMc02400 at 1152.554 kb on - strand, within SMc02400 at 1152.685 kb on + strand, within SMc02400 at 1152.685 kb on + strand, within SMc02400 at 1152.685 kb on + strand, within SMc02400 at 1152.686 kb on - strand, within SMc02400 at 1152.686 kb on - strand, within SMc02400 at 1152.686 kb on - strand, within SMc02400 at 1152.783 kb on - strand, within SMc02400 at 1152.784 kb on + strand, within SMc02400 at 1152.785 kb on - strand, within SMc02400 at 1152.785 kb on - strand, within SMc02400 at 1152.829 kb on + strand, within SMc02400 at 1152.862 kb on + strand, within SMc02400 at 1152.862 kb on + strand, within SMc02400 at 1152.863 kb on - strand, within SMc02400 at 1152.863 kb on - strand, within SMc02400 at 1152.863 kb on - strand, within SMc02400 at 1152.863 kb on - strand, within SMc02400 at 1152.869 kb on + strand at 1152.894 kb on - strand at 1152.929 kb on + strand at 1152.929 kb on + strand at 1152.930 kb on - strand at 1152.962 kb on + strand at 1153.004 kb on - strand at 1153.020 kb on + strand at 1153.020 kb on + strand at 1153.020 kb on + strand at 1153.020 kb on + strand at 1153.020 kb on + strand at 1153.021 kb on - strand at 1153.021 kb on - strand at 1153.021 kb on - strand at 1153.021 kb on - strand at 1153.037 kb on - strand at 1153.168 kb on - strand at 1153.188 kb on - strand at 1153.188 kb on - strand at 1153.188 kb on - strand at 1153.199 kb on - strand at 1153.221 kb on - strand at 1153.222 kb on + strand at 1153.222 kb on + strand at 1153.235 kb on + strand, within SMc02401 at 1153.236 kb on - strand, within SMc02401 at 1153.236 kb on - strand, within SMc02401 at 1153.236 kb on - strand, within SMc02401 at 1153.236 kb on - strand, within SMc02401 at 1153.236 kb on - strand, within SMc02401 at 1153.270 kb on + strand, within SMc02401 at 1153.270 kb on + strand, within SMc02401 at 1153.321 kb on + strand, within SMc02401 at 1153.321 kb on + strand, within SMc02401 at 1153.456 kb on + strand, within SMc02401 at 1153.456 kb on + strand, within SMc02401 at 1153.457 kb on - strand, within SMc02401 at 1153.457 kb on - strand, within SMc02401 at 1153.457 kb on - strand, within SMc02401 at 1153.460 kb on + strand, within SMc02401 at 1153.460 kb on + strand, within SMc02401 at 1153.460 kb on + strand, within SMc02401 at 1153.461 kb on - strand, within SMc02401 at 1153.461 kb on - strand, within SMc02401 at 1153.461 kb on - strand, within SMc02401 at 1153.461 kb on - strand, within SMc02401 at 1153.461 kb on - strand, within SMc02401 at 1153.461 kb on - strand, within SMc02401 at 1153.466 kb on + strand, within SMc02401 at 1153.466 kb on + strand, within SMc02401 at 1153.903 kb on + strand at 1153.938 kb on + strand at 1153.939 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,151,898 + -1.2 1,151,902 + +0.1 1,151,920 + +0.3 1,151,920 + -1.9 1,151,921 - -0.8 1,152,112 + SMc02400 0.18 -0.3 1,152,113 - SMc02400 0.18 -0.2 1,152,160 + SMc02400 0.23 -0.8 1,152,301 + SMc02400 0.36 -1.7 1,152,302 - SMc02400 0.36 -0.2 1,152,302 - SMc02400 0.36 -1.0 1,152,386 + SMc02400 0.44 -1.4 1,152,386 + SMc02400 0.44 +0.3 1,152,440 + SMc02400 0.50 +3.6 1,152,440 + SMc02400 0.50 +1.0 1,152,440 + SMc02400 0.50 +0.0 1,152,441 - SMc02400 0.50 +1.0 1,152,441 - SMc02400 0.50 +1.0 1,152,442 + SMc02400 0.50 +0.4 1,152,443 - SMc02400 0.50 +2.9 1,152,517 + SMc02400 0.57 -0.9 1,152,517 + SMc02400 0.57 -1.2 1,152,518 - SMc02400 0.57 +1.2 1,152,518 - SMc02400 0.57 -0.1 1,152,554 - SMc02400 0.60 -0.3 1,152,554 - SMc02400 0.60 +1.4 1,152,685 + SMc02400 0.73 +0.3 1,152,685 + SMc02400 0.73 +1.4 1,152,685 + SMc02400 0.73 -1.8 1,152,686 - SMc02400 0.73 +0.2 1,152,686 - SMc02400 0.73 +2.0 1,152,686 - SMc02400 0.73 +0.1 1,152,783 - SMc02400 0.82 -0.3 1,152,784 + SMc02400 0.82 -2.3 1,152,785 - SMc02400 0.82 -0.2 1,152,785 - SMc02400 0.82 +1.5 1,152,829 + SMc02400 0.87 -1.4 1,152,862 + SMc02400 0.90 -0.9 1,152,862 + SMc02400 0.90 +2.7 1,152,863 - SMc02400 0.90 +0.6 1,152,863 - SMc02400 0.90 +0.9 1,152,863 - SMc02400 0.90 +1.3 1,152,863 - SMc02400 0.90 +1.5 1,152,869 + +0.6 1,152,894 - -2.6 1,152,929 + +1.0 1,152,929 + -1.8 1,152,930 - -1.6 1,152,962 + -1.0 1,153,004 - -1.5 1,153,020 + +0.1 1,153,020 + -2.5 1,153,020 + -2.0 1,153,020 + +1.1 1,153,020 + -1.2 1,153,021 - -1.7 1,153,021 - -0.9 1,153,021 - +0.4 1,153,021 - +1.3 1,153,037 - +0.6 1,153,168 - +1.3 1,153,188 - -1.3 1,153,188 - -2.6 1,153,188 - +0.6 1,153,199 - +1.3 1,153,221 - -0.6 1,153,222 + -0.1 1,153,222 + +1.9 1,153,235 + SMc02401 0.11 -1.6 1,153,236 - SMc02401 0.11 +0.7 1,153,236 - SMc02401 0.11 -1.3 1,153,236 - SMc02401 0.11 -0.3 1,153,236 - SMc02401 0.11 +0.6 1,153,236 - SMc02401 0.11 +0.7 1,153,270 + SMc02401 0.18 -0.4 1,153,270 + SMc02401 0.18 +0.9 1,153,321 + SMc02401 0.29 +0.6 1,153,321 + SMc02401 0.29 +0.5 1,153,456 + SMc02401 0.57 -2.9 1,153,456 + SMc02401 0.57 +2.2 1,153,457 - SMc02401 0.58 -3.3 1,153,457 - SMc02401 0.58 -0.3 1,153,457 - SMc02401 0.58 -0.0 1,153,460 + SMc02401 0.58 +0.3 1,153,460 + SMc02401 0.58 -0.9 1,153,460 + SMc02401 0.58 +0.1 1,153,461 - SMc02401 0.58 -0.0 1,153,461 - SMc02401 0.58 +1.5 1,153,461 - SMc02401 0.58 +0.5 1,153,461 - SMc02401 0.58 +1.6 1,153,461 - SMc02401 0.58 +0.8 1,153,461 - SMc02401 0.58 -0.4 1,153,466 + SMc02401 0.60 -0.7 1,153,466 + SMc02401 0.60 +2.9 1,153,903 + -1.8 1,153,938 + -0.5 1,153,939 - +1.6
Or see this region's nucleotide sequence