Strain Fitness in Sinorhizobium meliloti 1021 around SMc01994

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01957 and SMc01994 are separated by 564 nucleotidesSMc01994 and SMc01959 overlap by 4 nucleotidesSMc01959 and SMc01960 are separated by 354 nucleotides SMc01957: SMc01957 - hypothetical protein, at 2,680,164 to 2,680,478 SMc01957 SMc01994: SMc01994 - transposase ISRM1, at 2,681,043 to 2,681,873 SMc01994 SMc01959: SMc01959 - transposase ISRM1, at 2,681,870 to 2,682,241 SMc01959 SMc01960: SMc01960 - oxidoreductase, at 2,682,596 to 2,683,162 SMc01960 Position (kb) 2681 2682Strain fitness (log2 ratio) -2 -1 0 1 2at 2680.147 kb on + strandat 2680.294 kb on + strand, within SMc01957at 2680.295 kb on - strand, within SMc01957at 2680.394 kb on + strand, within SMc01957at 2680.394 kb on + strand, within SMc01957at 2680.394 kb on + strand, within SMc01957at 2680.394 kb on + strand, within SMc01957at 2680.438 kb on + strand, within SMc01957at 2680.455 kb on + strandat 2680.491 kb on + strandat 2680.493 kb on + strandat 2680.494 kb on - strandat 2680.525 kb on + strandat 2680.540 kb on + strandat 2680.541 kb on - strandat 2680.541 kb on - strandat 2680.653 kb on + strandat 2680.654 kb on - strandat 2680.665 kb on + strandat 2680.666 kb on - strandat 2680.666 kb on - strandat 2680.709 kb on + strandat 2680.712 kb on + strandat 2680.790 kb on - strandat 2680.819 kb on + strandat 2680.834 kb on + strandat 2680.834 kb on + strandat 2680.834 kb on + strandat 2680.835 kb on - strandat 2680.835 kb on - strandat 2680.863 kb on + strandat 2680.864 kb on - strandat 2680.905 kb on + strandat 2680.929 kb on + strandat 2680.929 kb on + strandat 2680.929 kb on + strandat 2680.930 kb on - strandat 2680.930 kb on - strandat 2680.932 kb on - strandat 2682.288 kb on + strandat 2682.288 kb on + strandat 2682.292 kb on + strandat 2682.292 kb on + strandat 2682.292 kb on + strandat 2682.473 kb on + strandat 2682.593 kb on - strandat 2682.851 kb on + strand, within SMc01960at 2682.851 kb on + strand, within SMc01960at 2682.851 kb on + strand, within SMc01960at 2682.851 kb on + strand, within SMc01960at 2682.851 kb on + strand, within SMc01960at 2682.852 kb on - strand, within SMc01960at 2682.852 kb on - strand, within SMc01960

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,680,147 + -0.7
2,680,294 + SMc01957 0.41 -0.1
2,680,295 - SMc01957 0.42 -0.4
2,680,394 + SMc01957 0.73 +1.5
2,680,394 + SMc01957 0.73 +1.1
2,680,394 + SMc01957 0.73 -2.5
2,680,394 + SMc01957 0.73 -1.1
2,680,438 + SMc01957 0.87 +1.5
2,680,455 + +1.2
2,680,491 + -1.3
2,680,493 + -0.1
2,680,494 - -0.1
2,680,525 + +0.4
2,680,540 + +0.3
2,680,541 - +1.2
2,680,541 - +2.4
2,680,653 + +0.0
2,680,654 - +0.1
2,680,665 + +1.6
2,680,666 - -0.8
2,680,666 - +0.3
2,680,709 + +0.0
2,680,712 + +0.4
2,680,790 - -0.9
2,680,819 + -0.1
2,680,834 + -0.4
2,680,834 + +0.9
2,680,834 + -1.1
2,680,835 - -1.1
2,680,835 - -2.1
2,680,863 + -0.3
2,680,864 - -2.0
2,680,905 + -0.3
2,680,929 + -1.6
2,680,929 + -0.5
2,680,929 + -0.1
2,680,930 - -1.7
2,680,930 - +0.2
2,680,932 - -1.8
2,682,288 + -2.4
2,682,288 + -1.0
2,682,292 + +1.8
2,682,292 + +1.4
2,682,292 + -0.8
2,682,473 + -0.7
2,682,593 - +0.2
2,682,851 + SMc01960 0.45 -1.7
2,682,851 + SMc01960 0.45 +0.9
2,682,851 + SMc01960 0.45 +0.2
2,682,851 + SMc01960 0.45 +0.0
2,682,851 + SMc01960 0.45 +0.3
2,682,852 - SMc01960 0.45 +1.2
2,682,852 - SMc01960 0.45 +1.3

Or see this region's nucleotide sequence