Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01950 and SMc01951 are separated by 4 nucleotides SMc01951 and SMc01952 are separated by 394 nucleotides
SMc01950: SMc01950 - high-affinity branched-chain amino acid ABC transporter permease, at 2,671,601 to 2,672,986
SMc01950
SMc01951: SMc01951 - high-affinity branched-chain amino acid ABC transporter permease, at 2,672,991 to 2,673,893
SMc01951
SMc01952: SMc01952 - transmembrane protein, at 2,674,288 to 2,675,064
SMc01952
Position (kb)
2672
2673
2674 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2672.139 kb on + strand, within SMc01950 at 2672.157 kb on + strand, within SMc01950 at 2672.157 kb on + strand, within SMc01950 at 2672.158 kb on - strand, within SMc01950 at 2672.158 kb on - strand, within SMc01950 at 2672.160 kb on + strand, within SMc01950 at 2672.161 kb on - strand, within SMc01950 at 2672.161 kb on - strand, within SMc01950 at 2672.209 kb on + strand, within SMc01950 at 2672.209 kb on + strand, within SMc01950 at 2672.209 kb on + strand, within SMc01950 at 2672.209 kb on + strand, within SMc01950 at 2672.210 kb on - strand, within SMc01950 at 2672.445 kb on + strand, within SMc01950 at 2672.446 kb on - strand, within SMc01950 at 2672.446 kb on - strand, within SMc01950 at 2672.469 kb on + strand, within SMc01950 at 2672.470 kb on - strand, within SMc01950 at 2672.484 kb on + strand, within SMc01950 at 2672.485 kb on - strand, within SMc01950 at 2672.496 kb on + strand, within SMc01950 at 2672.559 kb on + strand, within SMc01950 at 2672.559 kb on + strand, within SMc01950 at 2672.559 kb on + strand, within SMc01950 at 2672.560 kb on - strand, within SMc01950 at 2672.560 kb on - strand, within SMc01950 at 2672.640 kb on + strand, within SMc01950 at 2672.641 kb on - strand, within SMc01950 at 2672.641 kb on - strand, within SMc01950 at 2672.992 kb on + strand at 2672.992 kb on + strand at 2672.992 kb on + strand at 2672.992 kb on + strand at 2672.992 kb on + strand at 2672.993 kb on - strand at 2672.993 kb on - strand at 2672.993 kb on - strand at 2672.995 kb on - strand at 2672.995 kb on - strand at 2673.082 kb on + strand, within SMc01951 at 2673.082 kb on + strand, within SMc01951 at 2673.239 kb on - strand, within SMc01951 at 2673.241 kb on + strand, within SMc01951 at 2673.241 kb on + strand, within SMc01951 at 2673.241 kb on + strand, within SMc01951 at 2673.242 kb on - strand, within SMc01951 at 2673.250 kb on + strand, within SMc01951 at 2673.251 kb on - strand, within SMc01951 at 2673.302 kb on - strand, within SMc01951 at 2673.400 kb on + strand, within SMc01951 at 2673.400 kb on + strand, within SMc01951 at 2673.400 kb on + strand, within SMc01951 at 2673.400 kb on + strand, within SMc01951 at 2673.482 kb on - strand at 2673.617 kb on - strand, within SMc01951 at 2673.818 kb on + strand at 2673.886 kb on + strand at 2673.886 kb on + strand at 2673.887 kb on - strand at 2674.152 kb on + strand at 2674.152 kb on + strand at 2674.212 kb on + strand at 2674.212 kb on + strand at 2674.212 kb on + strand at 2674.212 kb on + strand at 2674.213 kb on - strand at 2674.298 kb on + strand at 2674.299 kb on - strand at 2674.299 kb on - strand at 2674.346 kb on - strand at 2674.370 kb on - strand, within SMc01952 at 2674.599 kb on - strand, within SMc01952 at 2674.599 kb on - strand, within SMc01952 at 2674.630 kb on + strand, within SMc01952 at 2674.630 kb on + strand, within SMc01952 at 2674.631 kb on - strand, within SMc01952 at 2674.631 kb on - strand, within SMc01952 at 2674.631 kb on - strand, within SMc01952 at 2674.654 kb on + strand, within SMc01952 at 2674.765 kb on - strand, within SMc01952 at 2674.888 kb on + strand, within SMc01952 at 2674.888 kb on + strand, within SMc01952 at 2674.889 kb on - strand, within SMc01952 at 2674.889 kb on - strand, within SMc01952 at 2674.889 kb on - strand, within SMc01952 at 2674.889 kb on - strand, within SMc01952 at 2674.889 kb on - strand, within SMc01952
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 2,672,139 + SMc01950 0.39 -0.9 2,672,157 + SMc01950 0.40 -0.3 2,672,157 + SMc01950 0.40 +1.1 2,672,158 - SMc01950 0.40 -2.1 2,672,158 - SMc01950 0.40 +0.9 2,672,160 + SMc01950 0.40 +0.5 2,672,161 - SMc01950 0.40 +2.3 2,672,161 - SMc01950 0.40 +0.8 2,672,209 + SMc01950 0.44 +1.1 2,672,209 + SMc01950 0.44 -1.4 2,672,209 + SMc01950 0.44 -0.7 2,672,209 + SMc01950 0.44 +1.3 2,672,210 - SMc01950 0.44 +2.1 2,672,445 + SMc01950 0.61 -1.8 2,672,446 - SMc01950 0.61 -3.0 2,672,446 - SMc01950 0.61 -0.5 2,672,469 + SMc01950 0.63 +0.2 2,672,470 - SMc01950 0.63 +0.0 2,672,484 + SMc01950 0.64 +0.5 2,672,485 - SMc01950 0.64 +0.2 2,672,496 + SMc01950 0.65 +1.0 2,672,559 + SMc01950 0.69 -0.7 2,672,559 + SMc01950 0.69 -2.8 2,672,559 + SMc01950 0.69 -0.3 2,672,560 - SMc01950 0.69 -2.8 2,672,560 - SMc01950 0.69 +1.4 2,672,640 + SMc01950 0.75 -0.3 2,672,641 - SMc01950 0.75 +0.8 2,672,641 - SMc01950 0.75 -0.6 2,672,992 + +2.5 2,672,992 + -0.9 2,672,992 + +0.6 2,672,992 + -0.5 2,672,992 + +0.7 2,672,993 - -0.2 2,672,993 - +0.9 2,672,993 - -0.1 2,672,995 - +1.6 2,672,995 - -0.2 2,673,082 + SMc01951 0.10 -0.8 2,673,082 + SMc01951 0.10 +3.1 2,673,239 - SMc01951 0.27 +2.8 2,673,241 + SMc01951 0.28 -1.4 2,673,241 + SMc01951 0.28 +1.4 2,673,241 + SMc01951 0.28 -0.1 2,673,242 - SMc01951 0.28 +1.0 2,673,250 + SMc01951 0.29 -0.5 2,673,251 - SMc01951 0.29 -2.4 2,673,302 - SMc01951 0.34 +0.9 2,673,400 + SMc01951 0.45 +1.3 2,673,400 + SMc01951 0.45 +0.0 2,673,400 + SMc01951 0.45 +0.0 2,673,400 + SMc01951 0.45 +1.6 2,673,482 - +4.7 2,673,617 - SMc01951 0.69 +2.2 2,673,818 + -0.3 2,673,886 + -2.5 2,673,886 + +0.8 2,673,887 - -3.2 2,674,152 + -1.4 2,674,152 + +1.0 2,674,212 + +1.9 2,674,212 + +0.1 2,674,212 + -1.7 2,674,212 + +0.1 2,674,213 - +0.3 2,674,298 + -1.8 2,674,299 - -0.8 2,674,299 - -2.4 2,674,346 - -0.4 2,674,370 - SMc01952 0.11 +2.0 2,674,599 - SMc01952 0.40 -1.1 2,674,599 - SMc01952 0.40 -2.9 2,674,630 + SMc01952 0.44 -1.5 2,674,630 + SMc01952 0.44 -1.9 2,674,631 - SMc01952 0.44 +1.4 2,674,631 - SMc01952 0.44 -0.5 2,674,631 - SMc01952 0.44 -1.8 2,674,654 + SMc01952 0.47 +0.6 2,674,765 - SMc01952 0.61 +0.4 2,674,888 + SMc01952 0.77 +1.0 2,674,888 + SMc01952 0.77 +0.1 2,674,889 - SMc01952 0.77 -0.9 2,674,889 - SMc01952 0.77 +0.5 2,674,889 - SMc01952 0.77 +3.5 2,674,889 - SMc01952 0.77 -0.4 2,674,889 - SMc01952 0.77 -0.6
Or see this region's nucleotide sequence