Strain Fitness in Sinorhizobium meliloti 1021 around SMc01409

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01408 and SMc01409 are separated by 230 nucleotidesSMc01409 and SMc01410 are separated by 330 nucleotidesSMc01410 and SMc01489 are separated by 17 nucleotidesSMc01489 and SMc01490 are separated by 21 nucleotides SMc01408: SMc01408 - hypothetical protein, at 2,250,801 to 2,251,511 SMc01408 SMc01409: SMc01409 - hypothetical protein, at 2,251,742 to 2,252,848 SMc01409 SMc01410: SMc01410 - lipoprotein transmembrane, at 2,253,179 to 2,253,418 SMc01410 SMc01489: SMc01489 - signal peptide protein, at 2,253,436 to 2,253,789 SMc01489 SMc01490: SMc01490 - hypothetical protein, at 2,253,811 to 2,254,506 SMc01490 Position (kb) 2251 2252 2253Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2250.780 kb on - strandat 2250.883 kb on - strand, within SMc01408at 2250.896 kb on + strand, within SMc01408at 2251.025 kb on + strand, within SMc01408at 2251.026 kb on - strand, within SMc01408at 2251.055 kb on + strand, within SMc01408at 2251.068 kb on + strand, within SMc01408at 2251.068 kb on + strand, within SMc01408at 2251.068 kb on + strand, within SMc01408at 2251.069 kb on - strand, within SMc01408at 2251.069 kb on - strand, within SMc01408at 2251.069 kb on - strand, within SMc01408at 2251.069 kb on - strand, within SMc01408at 2251.069 kb on - strand, within SMc01408at 2251.069 kb on - strandat 2251.074 kb on + strand, within SMc01408at 2251.074 kb on + strand, within SMc01408at 2251.074 kb on + strand, within SMc01408at 2251.074 kb on + strand, within SMc01408at 2251.074 kb on + strand, within SMc01408at 2251.075 kb on - strand, within SMc01408at 2251.075 kb on - strand, within SMc01408at 2251.075 kb on - strand, within SMc01408at 2251.075 kb on - strand, within SMc01408at 2251.075 kb on - strand, within SMc01408at 2251.076 kb on + strand, within SMc01408at 2251.076 kb on + strand, within SMc01408at 2251.076 kb on + strand, within SMc01408at 2251.076 kb on + strand, within SMc01408at 2251.076 kb on + strand, within SMc01408at 2251.076 kb on + strand, within SMc01408at 2251.077 kb on - strand, within SMc01408at 2251.077 kb on - strand, within SMc01408at 2251.251 kb on + strand, within SMc01408at 2251.251 kb on + strand, within SMc01408at 2251.251 kb on + strand, within SMc01408at 2251.252 kb on - strand, within SMc01408at 2251.284 kb on + strand, within SMc01408at 2251.284 kb on + strand, within SMc01408at 2251.285 kb on - strand, within SMc01408at 2251.285 kb on - strand, within SMc01408at 2251.285 kb on - strand, within SMc01408at 2251.285 kb on - strand, within SMc01408at 2251.285 kb on - strand, within SMc01408at 2251.494 kb on + strandat 2251.496 kb on + strandat 2251.497 kb on - strandat 2251.497 kb on - strandat 2251.497 kb on - strandat 2251.547 kb on - strandat 2251.688 kb on + strandat 2251.688 kb on + strandat 2251.689 kb on - strandat 2251.689 kb on - strandat 2251.689 kb on - strandat 2251.689 kb on - strandat 2251.850 kb on + strandat 2251.850 kb on + strandat 2251.898 kb on + strand, within SMc01409at 2251.899 kb on - strand, within SMc01409at 2252.006 kb on + strand, within SMc01409at 2252.007 kb on - strand, within SMc01409at 2252.060 kb on + strand, within SMc01409at 2252.060 kb on + strand, within SMc01409at 2252.060 kb on + strand, within SMc01409at 2252.061 kb on - strand, within SMc01409at 2252.061 kb on - strand, within SMc01409at 2252.061 kb on - strand, within SMc01409at 2252.061 kb on - strand, within SMc01409at 2252.061 kb on - strand, within SMc01409at 2252.061 kb on - strand, within SMc01409at 2252.061 kb on - strand, within SMc01409at 2252.061 kb on - strand, within SMc01409at 2252.061 kb on - strand, within SMc01409at 2252.061 kb on - strand, within SMc01409at 2252.461 kb on - strand, within SMc01409at 2252.649 kb on + strand, within SMc01409at 2252.651 kb on + strand, within SMc01409at 2252.854 kb on - strandat 2252.897 kb on + strandat 2252.898 kb on - strandat 2252.898 kb on - strandat 2252.898 kb on - strandat 2252.928 kb on + strandat 2252.928 kb on + strandat 2252.928 kb on + strandat 2252.928 kb on + strandat 2252.928 kb on + strandat 2252.928 kb on + strandat 2252.928 kb on + strandat 2252.929 kb on - strandat 2252.929 kb on - strandat 2252.929 kb on - strandat 2252.929 kb on - strandat 2252.929 kb on - strandat 2252.929 kb on - strandat 2252.929 kb on - strandat 2252.929 kb on - strandat 2252.991 kb on + strandat 2252.994 kb on + strandat 2252.994 kb on + strandat 2252.994 kb on + strandat 2252.995 kb on - strandat 2252.998 kb on + strandat 2252.998 kb on + strandat 2252.998 kb on + strandat 2253.124 kb on + strandat 2253.137 kb on + strandat 2253.138 kb on - strandat 2253.138 kb on - strandat 2253.146 kb on + strandat 2253.146 kb on + strandat 2253.281 kb on - strand, within SMc01410at 2253.421 kb on + strandat 2253.422 kb on - strandat 2253.787 kb on + strandat 2253.788 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,250,780 - -1.0
2,250,883 - SMc01408 0.12 +1.2
2,250,896 + SMc01408 0.13 -0.7
2,251,025 + SMc01408 0.32 +0.1
2,251,026 - SMc01408 0.32 +1.2
2,251,055 + SMc01408 0.36 +0.7
2,251,068 + SMc01408 0.38 +1.0
2,251,068 + SMc01408 0.38 +0.2
2,251,068 + SMc01408 0.38 -3.0
2,251,069 - SMc01408 0.38 +0.5
2,251,069 - SMc01408 0.38 -2.2
2,251,069 - SMc01408 0.38 -2.6
2,251,069 - SMc01408 0.38 +0.2
2,251,069 - SMc01408 0.38 -0.3
2,251,069 - +0.4
2,251,074 + SMc01408 0.38 -0.8
2,251,074 + SMc01408 0.38 +1.1
2,251,074 + SMc01408 0.38 -0.2
2,251,074 + SMc01408 0.38 +2.6
2,251,074 + SMc01408 0.38 +0.3
2,251,075 - SMc01408 0.39 +0.3
2,251,075 - SMc01408 0.39 +1.4
2,251,075 - SMc01408 0.39 -1.7
2,251,075 - SMc01408 0.39 +1.0
2,251,075 - SMc01408 0.39 +0.2
2,251,076 + SMc01408 0.39 +0.1
2,251,076 + SMc01408 0.39 -0.4
2,251,076 + SMc01408 0.39 +1.0
2,251,076 + SMc01408 0.39 +0.3
2,251,076 + SMc01408 0.39 +0.8
2,251,076 + SMc01408 0.39 -1.1
2,251,077 - SMc01408 0.39 +0.9
2,251,077 - SMc01408 0.39 +0.3
2,251,251 + SMc01408 0.63 -0.8
2,251,251 + SMc01408 0.63 -0.7
2,251,251 + SMc01408 0.63 -0.2
2,251,252 - SMc01408 0.63 -0.2
2,251,284 + SMc01408 0.68 +0.8
2,251,284 + SMc01408 0.68 +2.8
2,251,285 - SMc01408 0.68 +1.3
2,251,285 - SMc01408 0.68 -0.7
2,251,285 - SMc01408 0.68 +0.8
2,251,285 - SMc01408 0.68 +0.0
2,251,285 - SMc01408 0.68 -0.3
2,251,494 + -2.7
2,251,496 + +1.5
2,251,497 - -0.5
2,251,497 - +0.0
2,251,497 - -0.4
2,251,547 - -1.2
2,251,688 + -2.0
2,251,688 + +0.6
2,251,689 - -0.4
2,251,689 - -1.1
2,251,689 - -1.6
2,251,689 - -2.4
2,251,850 + -1.1
2,251,850 + -0.9
2,251,898 + SMc01409 0.14 +0.1
2,251,899 - SMc01409 0.14 -0.4
2,252,006 + SMc01409 0.24 -1.7
2,252,007 - SMc01409 0.24 -0.4
2,252,060 + SMc01409 0.29 -0.7
2,252,060 + SMc01409 0.29 -1.8
2,252,060 + SMc01409 0.29 -0.2
2,252,061 - SMc01409 0.29 -0.6
2,252,061 - SMc01409 0.29 -0.7
2,252,061 - SMc01409 0.29 -2.5
2,252,061 - SMc01409 0.29 +1.5
2,252,061 - SMc01409 0.29 -2.9
2,252,061 - SMc01409 0.29 +0.6
2,252,061 - SMc01409 0.29 -0.7
2,252,061 - SMc01409 0.29 -1.3
2,252,061 - SMc01409 0.29 +0.0
2,252,061 - SMc01409 0.29 -1.1
2,252,461 - SMc01409 0.65 -2.3
2,252,649 + SMc01409 0.82 -2.3
2,252,651 + SMc01409 0.82 -1.1
2,252,854 - +0.8
2,252,897 + -0.4
2,252,898 - -1.4
2,252,898 - +1.6
2,252,898 - +2.0
2,252,928 + -0.5
2,252,928 + -0.0
2,252,928 + +0.4
2,252,928 + -2.8
2,252,928 + -2.4
2,252,928 + -2.2
2,252,928 + +0.5
2,252,929 - +0.3
2,252,929 - +0.3
2,252,929 - -0.0
2,252,929 - +0.3
2,252,929 - +0.3
2,252,929 - +0.4
2,252,929 - +1.0
2,252,929 - +1.6
2,252,991 + +0.1
2,252,994 + -1.4
2,252,994 + +0.5
2,252,994 + -0.0
2,252,995 - -1.4
2,252,998 + -1.8
2,252,998 + +3.6
2,252,998 + -0.5
2,253,124 + -2.1
2,253,137 + -2.2
2,253,138 - +0.4
2,253,138 - +0.2
2,253,146 + -0.3
2,253,146 + -1.1
2,253,281 - SMc01410 0.42 +0.2
2,253,421 + -0.2
2,253,422 - -1.8
2,253,787 + -3.4
2,253,788 - -0.4

Or see this region's nucleotide sequence