Strain Fitness in Sinorhizobium meliloti 1021 around SMc01331

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01332 and SMc01331 are separated by 86 nucleotidesSMc01331 and SMc01377 are separated by 194 nucleotidesSMc01377 and SMc04435 are separated by 145 nucleotidesSMc04435 and SMc01330 are separated by 115 nucleotides SMc01332: SMc01332 - hypothetical protein, at 1,450,947 to 1,451,447 SMc01332 SMc01331: SMc01331 - inorganic polyphosphate/ATP-NAD kinase, at 1,451,534 to 1,452,307 SMc01331 SMc01377: SMc01377 - tRNA-Thr, at 1,452,502 to 1,452,577 SMc01377 SMc04435: SMc04435 - hypothetical protein, at 1,452,723 to 1,453,148 SMc04435 SMc01330: SMc01330 - transcriptional regulator, at 1,453,264 to 1,454,205 SMc01330 Position (kb) 1451 1452 1453Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1450.753 kb on + strandat 1450.817 kb on + strandat 1450.828 kb on + strandat 1450.829 kb on - strandat 1450.829 kb on - strandat 1450.839 kb on + strandat 1450.839 kb on + strandat 1450.941 kb on + strandat 1451.100 kb on - strand, within SMc01332at 1451.110 kb on + strand, within SMc01332at 1451.111 kb on - strand, within SMc01332at 1451.237 kb on + strand, within SMc01332at 1451.239 kb on + strand, within SMc01332at 1451.239 kb on + strand, within SMc01332at 1451.239 kb on + strand, within SMc01332at 1451.394 kb on + strand, within SMc01332at 1451.394 kb on + strand, within SMc01332at 1451.507 kb on - strandat 1451.507 kb on - strandat 1451.507 kb on - strandat 1451.507 kb on - strandat 1451.511 kb on + strandat 1451.512 kb on - strandat 1452.478 kb on + strandat 1452.478 kb on + strandat 1452.499 kb on + strandat 1452.499 kb on + strandat 1452.578 kb on + strandat 1452.579 kb on - strandat 1452.579 kb on - strandat 1452.579 kb on - strandat 1452.665 kb on + strandat 1452.665 kb on + strandat 1452.675 kb on + strandat 1452.675 kb on + strandat 1452.675 kb on + strandat 1452.675 kb on + strandat 1452.675 kb on + strandat 1452.676 kb on - strandat 1452.676 kb on - strandat 1452.757 kb on + strandat 1452.765 kb on + strandat 1452.766 kb on - strand, within SMc04435at 1452.766 kb on - strand, within SMc04435at 1452.772 kb on + strand, within SMc04435at 1452.773 kb on - strand, within SMc04435at 1452.857 kb on - strand, within SMc04435at 1452.946 kb on + strand, within SMc04435at 1452.977 kb on + strand, within SMc04435at 1452.977 kb on + strand, within SMc04435at 1452.977 kb on + strand, within SMc04435at 1453.027 kb on - strand, within SMc04435at 1453.027 kb on - strand, within SMc04435at 1453.027 kb on - strand, within SMc04435at 1453.030 kb on + strand, within SMc04435at 1453.031 kb on - strand, within SMc04435at 1453.057 kb on + strand, within SMc04435at 1453.058 kb on - strand, within SMc04435at 1453.079 kb on + strand, within SMc04435at 1453.080 kb on - strand, within SMc04435at 1453.082 kb on + strand, within SMc04435at 1453.087 kb on + strand, within SMc04435at 1453.088 kb on - strand, within SMc04435at 1453.143 kb on - strandat 1453.249 kb on + strandat 1453.249 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,450,753 + +0.9
1,450,817 + -0.4
1,450,828 + -1.6
1,450,829 - -1.3
1,450,829 - -0.6
1,450,839 + +1.4
1,450,839 + +1.3
1,450,941 + +2.1
1,451,100 - SMc01332 0.31 -2.3
1,451,110 + SMc01332 0.33 -0.8
1,451,111 - SMc01332 0.33 -0.4
1,451,237 + SMc01332 0.58 -1.6
1,451,239 + SMc01332 0.58 -0.8
1,451,239 + SMc01332 0.58 -0.4
1,451,239 + SMc01332 0.58 +1.9
1,451,394 + SMc01332 0.89 -2.2
1,451,394 + SMc01332 0.89 +0.1
1,451,507 - +0.6
1,451,507 - +0.7
1,451,507 - +0.3
1,451,507 - +0.4
1,451,511 + -1.4
1,451,512 - -0.4
1,452,478 + +1.1
1,452,478 + +0.3
1,452,499 + +0.1
1,452,499 + -1.8
1,452,578 + -0.6
1,452,579 - +0.3
1,452,579 - +0.4
1,452,579 - +0.5
1,452,665 + -1.6
1,452,665 + +1.1
1,452,675 + +0.3
1,452,675 + -1.5
1,452,675 + -2.8
1,452,675 + -0.1
1,452,675 + -0.2
1,452,676 - -2.6
1,452,676 - +0.3
1,452,757 + +0.5
1,452,765 + -0.1
1,452,766 - SMc04435 0.10 +1.4
1,452,766 - SMc04435 0.10 -0.6
1,452,772 + SMc04435 0.12 +0.1
1,452,773 - SMc04435 0.12 -0.8
1,452,857 - SMc04435 0.31 -0.7
1,452,946 + SMc04435 0.52 +2.5
1,452,977 + SMc04435 0.60 -1.1
1,452,977 + SMc04435 0.60 +0.3
1,452,977 + SMc04435 0.60 +1.2
1,453,027 - SMc04435 0.71 +1.2
1,453,027 - SMc04435 0.71 +0.6
1,453,027 - SMc04435 0.71 +0.2
1,453,030 + SMc04435 0.72 -0.5
1,453,031 - SMc04435 0.72 -2.3
1,453,057 + SMc04435 0.78 -0.0
1,453,058 - SMc04435 0.79 -2.8
1,453,079 + SMc04435 0.84 -2.1
1,453,080 - SMc04435 0.84 +0.4
1,453,082 + SMc04435 0.84 -3.5
1,453,087 + SMc04435 0.85 -1.4
1,453,088 - SMc04435 0.86 +2.9
1,453,143 - +0.8
1,453,249 + +0.7
1,453,249 + -0.5

Or see this region's nucleotide sequence