Strain Fitness in Sinorhizobium meliloti 1021 around SMc01315

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01316 and SMc01315 are separated by 347 nucleotidesSMc01315 and SMc01314 are separated by 685 nucleotides SMc01316: SMc01316 - DNA-directed RNA polymerase subunit beta', at 1,468,640 to 1,472,845 SMc01316 SMc01315: SMc01315 - hypothetical protein, at 1,473,193 to 1,473,489 SMc01315 SMc01314: SMc01314 - 30S ribosomal protein S12, at 1,474,175 to 1,474,546 SMc01314 Position (kb) 1473 1474Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1472.844 kb on - strandat 1472.862 kb on - strandat 1472.886 kb on - strandat 1472.947 kb on - strandat 1472.986 kb on + strandat 1472.996 kb on - strandat 1473.033 kb on + strandat 1473.240 kb on - strand, within SMc01315at 1473.511 kb on + strandat 1473.511 kb on + strandat 1473.512 kb on - strandat 1473.514 kb on + strandat 1473.514 kb on + strandat 1473.631 kb on - strandat 1473.637 kb on + strandat 1473.753 kb on + strandat 1473.754 kb on - strandat 1473.768 kb on - strandat 1473.841 kb on - strandat 1473.841 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,472,844 - +0.4
1,472,862 - +0.6
1,472,886 - +0.3
1,472,947 - -0.3
1,472,986 + +0.8
1,472,996 - -1.0
1,473,033 + +0.8
1,473,240 - SMc01315 0.16 +1.1
1,473,511 + -0.5
1,473,511 + -2.7
1,473,512 - -1.0
1,473,514 + -2.3
1,473,514 + +0.5
1,473,631 - -0.7
1,473,637 + +0.8
1,473,753 + +0.9
1,473,754 - +1.8
1,473,768 - +2.9
1,473,841 - +0.7
1,473,841 - +0.0

Or see this region's nucleotide sequence