Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01219 and SMc01218 are separated by 83 nucleotides SMc01218 and SMc01217 are separated by 292 nucleotides SMc01217 and SMc01216 are separated by 3 nucleotides SMc01216 and SMc01215 are separated by 128 nucleotides
SMc01219: SMc01219 - lipopolysaccharide core biosynthesis mannosyltransferase, at 1,705,047 to 1,706,102
SMc01219
SMc01218: SMc01218 - transcription elongation factor GreA, at 1,706,186 to 1,706,662
SMc01218
SMc01217: SMc01217 - transport transmembrane protein, at 1,706,955 to 1,708,424
SMc01217
SMc01216: SMc01216 - hypothetical protein, at 1,708,428 to 1,708,730
SMc01216
SMc01215: SMc01215 - carbamoyl phosphate synthase large subunit, at 1,708,859 to 1,712,350
SMc01215
Position (kb)
1706
1707
1708
1709 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1706.775 kb on - strand at 1706.775 kb on - strand at 1706.775 kb on - strand at 1706.882 kb on - strand at 1706.882 kb on - strand at 1706.882 kb on - strand at 1706.892 kb on + strand at 1706.915 kb on + strand at 1706.915 kb on + strand at 1706.916 kb on - strand at 1706.933 kb on - strand at 1706.939 kb on + strand at 1706.940 kb on - strand at 1706.940 kb on - strand at 1706.962 kb on + strand at 1707.189 kb on + strand, within SMc01217 at 1707.368 kb on + strand, within SMc01217 at 1707.369 kb on - strand, within SMc01217 at 1707.369 kb on - strand, within SMc01217 at 1707.387 kb on + strand, within SMc01217 at 1707.387 kb on + strand, within SMc01217 at 1707.388 kb on - strand, within SMc01217 at 1707.454 kb on + strand, within SMc01217 at 1707.507 kb on + strand, within SMc01217 at 1707.507 kb on + strand, within SMc01217 at 1707.507 kb on + strand, within SMc01217 at 1707.508 kb on - strand, within SMc01217 at 1707.542 kb on - strand, within SMc01217 at 1707.658 kb on + strand, within SMc01217 at 1707.658 kb on + strand, within SMc01217 at 1707.659 kb on - strand, within SMc01217 at 1707.659 kb on - strand, within SMc01217 at 1707.681 kb on - strand, within SMc01217 at 1707.873 kb on + strand, within SMc01217 at 1707.873 kb on + strand, within SMc01217 at 1707.874 kb on - strand, within SMc01217 at 1707.874 kb on - strand, within SMc01217 at 1707.874 kb on - strand, within SMc01217 at 1707.882 kb on + strand, within SMc01217 at 1707.950 kb on - strand, within SMc01217 at 1708.084 kb on - strand, within SMc01217 at 1708.230 kb on + strand, within SMc01217 at 1708.637 kb on - strand, within SMc01216 at 1708.639 kb on + strand, within SMc01216 at 1708.640 kb on - strand, within SMc01216 at 1708.721 kb on - strand at 1708.723 kb on - strand at 1709.368 kb on + strand, within SMc01215
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,706,775 - +1.2 1,706,775 - +0.9 1,706,775 - +0.4 1,706,882 - +0.4 1,706,882 - -0.7 1,706,882 - -0.8 1,706,892 + +3.9 1,706,915 + -0.7 1,706,915 + +0.1 1,706,916 - +1.0 1,706,933 - +0.7 1,706,939 + +0.2 1,706,940 - -1.0 1,706,940 - -0.6 1,706,962 + +2.9 1,707,189 + SMc01217 0.16 -1.3 1,707,368 + SMc01217 0.28 -1.8 1,707,369 - SMc01217 0.28 -0.5 1,707,369 - SMc01217 0.28 -2.5 1,707,387 + SMc01217 0.29 -0.3 1,707,387 + SMc01217 0.29 -0.5 1,707,388 - SMc01217 0.29 -2.1 1,707,454 + SMc01217 0.34 +1.5 1,707,507 + SMc01217 0.38 +0.2 1,707,507 + SMc01217 0.38 -0.6 1,707,507 + SMc01217 0.38 +0.1 1,707,508 - SMc01217 0.38 +0.5 1,707,542 - SMc01217 0.40 -0.9 1,707,658 + SMc01217 0.48 -1.5 1,707,658 + SMc01217 0.48 -1.9 1,707,659 - SMc01217 0.48 -0.4 1,707,659 - SMc01217 0.48 -1.3 1,707,681 - SMc01217 0.49 -0.6 1,707,873 + SMc01217 0.62 +0.8 1,707,873 + SMc01217 0.62 +0.2 1,707,874 - SMc01217 0.63 -0.0 1,707,874 - SMc01217 0.63 -0.2 1,707,874 - SMc01217 0.63 +0.6 1,707,882 + SMc01217 0.63 -0.6 1,707,950 - SMc01217 0.68 +0.4 1,708,084 - SMc01217 0.77 +1.1 1,708,230 + SMc01217 0.87 +0.9 1,708,637 - SMc01216 0.69 -0.1 1,708,639 + SMc01216 0.70 -0.4 1,708,640 - SMc01216 0.70 -0.7 1,708,721 - +2.1 1,708,723 - +0.9 1,709,368 + SMc01215 0.15 -1.0
Or see this region's nucleotide sequence