Strain Fitness in Sinorhizobium meliloti 1021 around SMc00676

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00677 and SMc00676 are separated by 113 nucleotidesSMc00676 and SMc00675 are separated by 87 nucleotides SMc00677: SMc00677 - hypothetical protein, at 2,898,334 to 2,901,387 SMc00677 SMc00676: SMc00676 - amino acid-binding periplasmic signal peptide protein, at 2,901,501 to 2,902,496 SMc00676 SMc00675: SMc00675 - hypothetical protein, at 2,902,584 to 2,905,511 SMc00675 Position (kb) 2901 2902 2903Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 2900.590 kb on + strand, within SMc00677at 2900.590 kb on + strand, within SMc00677at 2900.591 kb on - strand, within SMc00677at 2900.591 kb on - strand, within SMc00677at 2900.881 kb on - strand, within SMc00677at 2900.977 kb on + strand, within SMc00677at 2900.977 kb on + strand, within SMc00677at 2900.977 kb on + strand, within SMc00677at 2900.978 kb on - strand, within SMc00677at 2901.122 kb on - strandat 2901.122 kb on - strandat 2901.396 kb on + strandat 2901.396 kb on + strandat 2901.396 kb on + strandat 2901.396 kb on + strandat 2901.661 kb on - strand, within SMc00676at 2901.714 kb on + strand, within SMc00676at 2901.843 kb on + strand, within SMc00676at 2901.843 kb on + strand, within SMc00676at 2901.844 kb on - strand, within SMc00676at 2901.844 kb on - strand, within SMc00676at 2901.846 kb on + strand, within SMc00676at 2901.846 kb on + strand, within SMc00676at 2901.847 kb on - strand, within SMc00676at 2901.847 kb on - strand, within SMc00676at 2901.964 kb on - strand, within SMc00676at 2901.988 kb on - strand, within SMc00676at 2902.081 kb on - strand, within SMc00676at 2902.222 kb on + strand, within SMc00676at 2902.222 kb on + strand, within SMc00676at 2902.222 kb on + strand, within SMc00676at 2902.222 kb on + strand, within SMc00676at 2902.223 kb on - strand, within SMc00676at 2902.356 kb on + strand, within SMc00676at 2902.585 kb on + strandat 2902.802 kb on - strandat 2902.985 kb on - strand, within SMc00675at 2903.079 kb on - strand, within SMc00675at 2903.191 kb on + strand, within SMc00675at 2903.191 kb on + strand, within SMc00675at 2903.192 kb on - strand, within SMc00675at 2903.242 kb on + strand, within SMc00675at 2903.323 kb on + strand, within SMc00675at 2903.363 kb on - strand, within SMc00675at 2903.363 kb on - strand, within SMc00675at 2903.473 kb on + strand, within SMc00675at 2903.473 kb on + strand, within SMc00675at 2903.474 kb on - strand, within SMc00675at 2903.474 kb on - strand, within SMc00675

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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2,900,590 + SMc00677 0.74 +0.5
2,900,590 + SMc00677 0.74 +0.5
2,900,591 - SMc00677 0.74 +0.6
2,900,591 - SMc00677 0.74 +0.6
2,900,881 - SMc00677 0.83 -2.9
2,900,977 + SMc00677 0.87 -1.6
2,900,977 + SMc00677 0.87 +0.7
2,900,977 + SMc00677 0.87 +0.6
2,900,978 - SMc00677 0.87 -0.8
2,901,122 - +0.5
2,901,122 - +0.3
2,901,396 + -0.1
2,901,396 + -0.7
2,901,396 + -1.1
2,901,396 + +0.7
2,901,661 - SMc00676 0.16 -1.2
2,901,714 + SMc00676 0.21 -0.5
2,901,843 + SMc00676 0.34 +1.9
2,901,843 + SMc00676 0.34 +0.4
2,901,844 - SMc00676 0.34 -2.6
2,901,844 - SMc00676 0.34 -1.4
2,901,846 + SMc00676 0.35 +0.4
2,901,846 + SMc00676 0.35 -1.1
2,901,847 - SMc00676 0.35 +0.3
2,901,847 - SMc00676 0.35 -1.4
2,901,964 - SMc00676 0.46 +2.3
2,901,988 - SMc00676 0.49 +1.6
2,902,081 - SMc00676 0.58 +0.1
2,902,222 + SMc00676 0.72 +0.6
2,902,222 + SMc00676 0.72 +5.1
2,902,222 + SMc00676 0.72 -0.8
2,902,222 + SMc00676 0.72 +0.8
2,902,223 - SMc00676 0.72 +0.7
2,902,356 + SMc00676 0.86 +0.1
2,902,585 + +0.4
2,902,802 - +0.2
2,902,985 - SMc00675 0.14 -0.1
2,903,079 - SMc00675 0.17 +0.3
2,903,191 + SMc00675 0.21 +0.8
2,903,191 + SMc00675 0.21 -1.3
2,903,192 - SMc00675 0.21 -2.8
2,903,242 + SMc00675 0.22 +0.5
2,903,323 + SMc00675 0.25 -0.1
2,903,363 - SMc00675 0.27 +3.1
2,903,363 - SMc00675 0.27 +0.3
2,903,473 + SMc00675 0.30 -0.7
2,903,473 + SMc00675 0.30 -1.3
2,903,474 - SMc00675 0.30 +4.1
2,903,474 - SMc00675 0.30 +0.2

Or see this region's nucleotide sequence