Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00503 and SMc00502 overlap by 4 nucleotides SMc00502 and SMc00501 are separated by 40 nucleotides SMc00501 and SMc00500 are separated by 1 nucleotides
SMc00503: SMc00503 - hypothetical protein, at 1,908,748 to 1,909,482
SMc00503
SMc00502: SMc00502 - hypothetical protein, at 1,909,479 to 1,910,153
SMc00502
SMc00501: SMc00501 - hypothetical protein, at 1,910,194 to 1,911,078
SMc00501
SMc00500: SMc00500 - hypothetical protein, at 1,911,080 to 1,912,597
SMc00500
Position (kb)
1910
1911
1912 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1909.199 kb on + strand, within SMc00503 at 1909.351 kb on + strand, within SMc00503 at 1909.414 kb on + strand at 1909.414 kb on + strand at 1909.414 kb on + strand at 1909.514 kb on + strand at 1909.515 kb on - strand at 1909.515 kb on - strand at 1909.596 kb on + strand, within SMc00502 at 1909.596 kb on + strand, within SMc00502 at 1909.597 kb on - strand, within SMc00502 at 1909.597 kb on - strand, within SMc00502 at 1909.597 kb on - strand, within SMc00502 at 1909.597 kb on - strand, within SMc00502 at 1909.597 kb on - strand, within SMc00502 at 1909.598 kb on + strand, within SMc00502 at 1909.598 kb on + strand, within SMc00502 at 1909.599 kb on - strand, within SMc00502 at 1909.684 kb on + strand, within SMc00502 at 1909.685 kb on - strand, within SMc00502 at 1909.685 kb on - strand, within SMc00502 at 1910.103 kb on + strand at 1910.103 kb on + strand at 1910.143 kb on - strand at 1910.143 kb on - strand at 1910.144 kb on + strand at 1910.284 kb on + strand, within SMc00501 at 1910.584 kb on + strand, within SMc00501 at 1910.585 kb on - strand, within SMc00501 at 1910.585 kb on - strand, within SMc00501 at 1910.585 kb on - strand, within SMc00501 at 1910.855 kb on - strand, within SMc00501 at 1910.858 kb on - strand, within SMc00501 at 1910.858 kb on - strand, within SMc00501 at 1911.089 kb on - strand at 1911.089 kb on - strand at 1911.089 kb on - strand at 1911.093 kb on + strand at 1911.094 kb on - strand at 1911.094 kb on - strand at 1911.094 kb on - strand at 1911.094 kb on - strand at 1911.094 kb on - strand at 1911.135 kb on + strand at 1911.135 kb on + strand at 1911.136 kb on - strand at 1911.136 kb on - strand at 1911.136 kb on - strand at 1911.227 kb on + strand at 1911.227 kb on + strand at 1911.228 kb on - strand at 1911.273 kb on - strand, within SMc00500 at 1911.273 kb on - strand at 1911.274 kb on + strand, within SMc00500 at 1911.274 kb on + strand, within SMc00500 at 1911.275 kb on - strand, within SMc00500 at 1911.287 kb on + strand, within SMc00500 at 1911.301 kb on - strand, within SMc00500 at 1911.363 kb on - strand, within SMc00500 at 1911.525 kb on + strand, within SMc00500 at 1911.525 kb on + strand, within SMc00500 at 1911.526 kb on - strand, within SMc00500 at 1911.621 kb on + strand, within SMc00500 at 1911.621 kb on + strand, within SMc00500 at 1911.622 kb on - strand, within SMc00500 at 1911.622 kb on - strand, within SMc00500 at 1911.622 kb on - strand, within SMc00500 at 1911.671 kb on + strand, within SMc00500 at 1911.671 kb on + strand, within SMc00500 at 1911.672 kb on - strand, within SMc00500 at 1911.672 kb on - strand, within SMc00500
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,909,199 + SMc00503 0.61 -0.9 1,909,351 + SMc00503 0.82 -1.4 1,909,414 + -2.8 1,909,414 + +3.0 1,909,414 + -0.7 1,909,514 + -1.4 1,909,515 - -1.2 1,909,515 - +0.1 1,909,596 + SMc00502 0.17 +1.6 1,909,596 + SMc00502 0.17 -4.1 1,909,597 - SMc00502 0.17 -1.0 1,909,597 - SMc00502 0.17 +0.3 1,909,597 - SMc00502 0.17 -1.2 1,909,597 - SMc00502 0.17 -1.2 1,909,597 - SMc00502 0.17 +0.2 1,909,598 + SMc00502 0.18 +0.5 1,909,598 + SMc00502 0.18 -2.4 1,909,599 - SMc00502 0.18 +0.3 1,909,684 + SMc00502 0.30 -1.8 1,909,685 - SMc00502 0.31 +0.5 1,909,685 - SMc00502 0.31 -0.3 1,910,103 + -1.1 1,910,103 + -0.4 1,910,143 - +2.2 1,910,143 - +0.2 1,910,144 + +2.6 1,910,284 + SMc00501 0.10 -0.4 1,910,584 + SMc00501 0.44 +0.8 1,910,585 - SMc00501 0.44 +1.5 1,910,585 - SMc00501 0.44 +1.2 1,910,585 - SMc00501 0.44 -0.4 1,910,855 - SMc00501 0.75 +0.5 1,910,858 - SMc00501 0.75 +0.0 1,910,858 - SMc00501 0.75 -1.1 1,911,089 - -1.9 1,911,089 - +0.2 1,911,089 - -0.2 1,911,093 + -0.4 1,911,094 - +0.3 1,911,094 - -0.9 1,911,094 - +0.0 1,911,094 - -2.0 1,911,094 - +0.6 1,911,135 + -3.2 1,911,135 + -2.8 1,911,136 - -0.7 1,911,136 - -0.2 1,911,136 - -3.2 1,911,227 + +0.4 1,911,227 + -1.2 1,911,228 - +0.4 1,911,273 - SMc00500 0.13 +0.2 1,911,273 - +1.0 1,911,274 + SMc00500 0.13 +0.6 1,911,274 + SMc00500 0.13 -0.4 1,911,275 - SMc00500 0.13 +0.2 1,911,287 + SMc00500 0.14 -1.6 1,911,301 - SMc00500 0.15 +0.6 1,911,363 - SMc00500 0.19 +0.5 1,911,525 + SMc00500 0.29 +0.4 1,911,525 + SMc00500 0.29 +0.8 1,911,526 - SMc00500 0.29 +0.3 1,911,621 + SMc00500 0.36 -1.2 1,911,621 + SMc00500 0.36 +0.4 1,911,622 - SMc00500 0.36 +0.3 1,911,622 - SMc00500 0.36 +1.9 1,911,622 - SMc00500 0.36 -0.1 1,911,671 + SMc00500 0.39 -1.0 1,911,671 + SMc00500 0.39 +0.4 1,911,672 - SMc00500 0.39 -1.2 1,911,672 - SMc00500 0.39 -0.0
Or see this region's nucleotide sequence