Strain Fitness in Sinorhizobium meliloti 1021 around SMc00335

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00333 and SMc00334 overlap by 1 nucleotidesSMc00334 and SMc00335 are separated by 163 nucleotidesSMc00335 and SMc00336 are separated by 413 nucleotides SMc00333: SMc00333 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 286,978 to 288,345 SMc00333 SMc00334: SMc00334 - cytidylate kinase, at 288,345 to 288,983 SMc00334 SMc00335: SMc00335 - 30S ribosomal protein S1, at 289,147 to 290,853 SMc00335 SMc00336: SMc00336 - hypothetical protein, at 291,267 to 292,847 SMc00336 Position (kb) 289 290 291Strain fitness (log2 ratio) -2 -1 0 1 2 3at 288.421 kb on - strand, within SMc00334at 288.732 kb on + strand, within SMc00334at 288.922 kb on + strandat 291.143 kb on + strandat 291.143 kb on + strandat 291.151 kb on + strandat 291.187 kb on - strandat 291.187 kb on - strandat 291.301 kb on + strandat 291.301 kb on + strandat 291.810 kb on + strand, within SMc00336

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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288,421 - SMc00334 0.12 -2.4
288,732 + SMc00334 0.61 -2.3
288,922 + -0.4
291,143 + -1.8
291,143 + +3.6
291,151 + -0.1
291,187 - -1.1
291,187 - +1.9
291,301 + -0.2
291,301 + -1.1
291,810 + SMc00336 0.34 +0.3

Or see this region's nucleotide sequence