Strain Fitness in Sinorhizobium meliloti 1021 around SMc00182

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00184 and SMc00183 are separated by 52 nucleotidesSMc00183 and SMc00182 are separated by 78 nucleotidesSMc00182 and SMc00196 overlap by 4 nucleotides SMc00184: SMc00184 - tRNA/rRNA methyltransferase, at 1,980,206 to 1,980,667 SMc00184 SMc00183: SMc00183 - hypothetical protein, at 1,980,720 to 1,981,292 SMc00183 SMc00182: SMc00182 - transcriptional regulator, at 1,981,371 to 1,981,856 SMc00182 SMc00196: SMc00196 - transporter, at 1,981,853 to 1,982,980 SMc00196 Position (kb) 1981 1982Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1980.737 kb on + strandat 1980.738 kb on - strandat 1980.739 kb on + strandat 1980.739 kb on + strandat 1980.740 kb on - strandat 1980.740 kb on - strandat 1980.948 kb on + strand, within SMc00183at 1980.948 kb on + strand, within SMc00183at 1980.949 kb on - strand, within SMc00183at 1980.970 kb on + strand, within SMc00183at 1980.970 kb on + strand, within SMc00183at 1981.009 kb on + strand, within SMc00183at 1981.009 kb on + strand, within SMc00183at 1981.009 kb on + strand, within SMc00183at 1981.057 kb on + strand, within SMc00183at 1981.058 kb on - strand, within SMc00183at 1981.058 kb on - strand, within SMc00183at 1981.058 kb on - strand, within SMc00183at 1981.261 kb on + strandat 1981.394 kb on + strandat 1981.395 kb on - strandat 1981.395 kb on - strandat 1981.568 kb on + strand, within SMc00182at 1981.854 kb on + strandat 1981.854 kb on + strandat 1981.855 kb on - strandat 1981.855 kb on - strandat 1981.876 kb on + strandat 1981.876 kb on + strandat 1982.112 kb on + strand, within SMc00196at 1982.112 kb on + strand, within SMc00196at 1982.112 kb on + strand, within SMc00196at 1982.113 kb on - strand, within SMc00196at 1982.362 kb on + strand, within SMc00196at 1982.363 kb on - strand, within SMc00196at 1982.751 kb on + strand, within SMc00196at 1982.848 kb on - strand, within SMc00196

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,980,737 + +0.3
1,980,738 - +1.2
1,980,739 + -0.2
1,980,739 + +0.6
1,980,740 - -1.2
1,980,740 - -1.8
1,980,948 + SMc00183 0.40 +0.6
1,980,948 + SMc00183 0.40 +2.0
1,980,949 - SMc00183 0.40 -1.5
1,980,970 + SMc00183 0.44 -0.8
1,980,970 + SMc00183 0.44 -0.0
1,981,009 + SMc00183 0.50 -1.9
1,981,009 + SMc00183 0.50 +0.3
1,981,009 + SMc00183 0.50 -0.7
1,981,057 + SMc00183 0.59 -0.8
1,981,058 - SMc00183 0.59 -0.1
1,981,058 - SMc00183 0.59 -0.8
1,981,058 - SMc00183 0.59 -1.2
1,981,261 + -1.3
1,981,394 + +1.2
1,981,395 - +1.2
1,981,395 - -2.3
1,981,568 + SMc00182 0.41 -0.4
1,981,854 + -1.1
1,981,854 + -0.8
1,981,855 - +3.0
1,981,855 - -1.3
1,981,876 + -2.4
1,981,876 + -0.5
1,982,112 + SMc00196 0.23 -1.4
1,982,112 + SMc00196 0.23 +0.6
1,982,112 + SMc00196 0.23 -1.2
1,982,113 - SMc00196 0.23 -1.3
1,982,362 + SMc00196 0.45 -2.1
1,982,363 - SMc00196 0.45 +0.3
1,982,751 + SMc00196 0.80 +0.1
1,982,848 - SMc00196 0.88 -0.8

Or see this region's nucleotide sequence