Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2414 and SMa2339 overlap by 1 nucleotides SMa2339 and SMa2341 are separated by 200 nucleotides
SMa2414: SMa2414 - RhtA rhizobactin receptor precursor, at 1,315,745 to 1,317,985
SMa2414
SMa2339: SMa2339 - Siderophore biosynthesis protein, at 1,317,985 to 1,319,097
SMa2339
SMa2341: SMa2341 - LysR family transcriptional regulator, at 1,319,298 to 1,320,185
SMa2341
Position (kb)
1317
1318
1319
1320 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1317.041 kb on + strand, within SMa2414 at 1317.105 kb on + strand, within SMa2414 at 1317.105 kb on + strand, within SMa2414 at 1317.175 kb on - strand, within SMa2414 at 1317.175 kb on - strand, within SMa2414 at 1317.175 kb on - strand, within SMa2414 at 1317.175 kb on - strand, within SMa2414 at 1317.175 kb on - strand, within SMa2414 at 1317.195 kb on - strand, within SMa2414 at 1317.227 kb on + strand, within SMa2414 at 1317.227 kb on + strand, within SMa2414 at 1317.241 kb on + strand, within SMa2414 at 1317.303 kb on - strand, within SMa2414 at 1317.317 kb on + strand, within SMa2414 at 1317.317 kb on + strand, within SMa2414 at 1317.318 kb on - strand, within SMa2414 at 1317.318 kb on - strand, within SMa2414 at 1317.318 kb on - strand, within SMa2414 at 1317.318 kb on - strand, within SMa2414 at 1317.338 kb on + strand, within SMa2414 at 1317.338 kb on + strand, within SMa2414 at 1317.339 kb on - strand, within SMa2414 at 1317.339 kb on - strand, within SMa2414 at 1317.339 kb on - strand, within SMa2414 at 1317.455 kb on + strand, within SMa2414 at 1317.458 kb on + strand, within SMa2414 at 1317.459 kb on - strand, within SMa2414 at 1317.459 kb on - strand, within SMa2414 at 1317.537 kb on - strand, within SMa2414 at 1317.561 kb on + strand, within SMa2414 at 1317.683 kb on + strand, within SMa2414 at 1317.778 kb on + strand at 1317.778 kb on + strand at 1317.778 kb on + strand at 1317.778 kb on + strand at 1317.779 kb on - strand at 1317.779 kb on - strand at 1317.779 kb on - strand at 1317.848 kb on - strand at 1317.867 kb on - strand at 1317.867 kb on - strand at 1317.867 kb on - strand at 1317.935 kb on + strand at 1317.936 kb on - strand at 1318.039 kb on + strand at 1318.114 kb on + strand, within SMa2339 at 1318.292 kb on + strand, within SMa2339 at 1318.513 kb on + strand at 1318.602 kb on + strand, within SMa2339 at 1318.689 kb on + strand, within SMa2339 at 1318.690 kb on - strand, within SMa2339 at 1318.695 kb on - strand, within SMa2339 at 1318.744 kb on + strand, within SMa2339 at 1318.745 kb on - strand, within SMa2339 at 1318.745 kb on - strand, within SMa2339 at 1318.793 kb on - strand, within SMa2339 at 1318.814 kb on + strand, within SMa2339 at 1318.814 kb on + strand, within SMa2339 at 1318.815 kb on - strand, within SMa2339 at 1318.815 kb on - strand, within SMa2339 at 1319.173 kb on + strand at 1319.200 kb on + strand at 1319.313 kb on + strand at 1319.313 kb on + strand at 1319.313 kb on + strand at 1319.313 kb on + strand at 1319.582 kb on - strand, within SMa2341 at 1319.613 kb on + strand, within SMa2341 at 1319.613 kb on + strand, within SMa2341 at 1319.613 kb on + strand, within SMa2341 at 1319.613 kb on + strand, within SMa2341 at 1319.614 kb on - strand, within SMa2341 at 1319.671 kb on + strand, within SMa2341 at 1319.671 kb on + strand, within SMa2341 at 1319.671 kb on + strand, within SMa2341 at 1319.730 kb on - strand, within SMa2341 at 1319.886 kb on - strand, within SMa2341 at 1319.886 kb on - strand, within SMa2341
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,317,041 + SMa2414 0.58 -1.9 1,317,105 + SMa2414 0.61 +1.3 1,317,105 + SMa2414 0.61 -0.5 1,317,175 - SMa2414 0.64 -0.6 1,317,175 - SMa2414 0.64 +1.8 1,317,175 - SMa2414 0.64 -0.4 1,317,175 - SMa2414 0.64 +0.3 1,317,175 - SMa2414 0.64 -1.2 1,317,195 - SMa2414 0.65 -1.4 1,317,227 + SMa2414 0.66 +0.5 1,317,227 + SMa2414 0.66 -1.9 1,317,241 + SMa2414 0.67 +1.8 1,317,303 - SMa2414 0.70 +0.8 1,317,317 + SMa2414 0.70 +0.5 1,317,317 + SMa2414 0.70 +1.5 1,317,318 - SMa2414 0.70 +0.6 1,317,318 - SMa2414 0.70 +0.8 1,317,318 - SMa2414 0.70 -0.1 1,317,318 - SMa2414 0.70 -1.5 1,317,338 + SMa2414 0.71 +0.1 1,317,338 + SMa2414 0.71 +0.8 1,317,339 - SMa2414 0.71 +0.4 1,317,339 - SMa2414 0.71 +1.1 1,317,339 - SMa2414 0.71 -0.7 1,317,455 + SMa2414 0.76 -0.6 1,317,458 + SMa2414 0.76 -0.8 1,317,459 - SMa2414 0.76 -0.3 1,317,459 - SMa2414 0.76 -0.7 1,317,537 - SMa2414 0.80 -0.4 1,317,561 + SMa2414 0.81 +0.5 1,317,683 + SMa2414 0.86 +1.0 1,317,778 + -2.1 1,317,778 + +3.0 1,317,778 + -1.1 1,317,778 + -1.0 1,317,779 - +0.4 1,317,779 - +1.2 1,317,779 - +0.5 1,317,848 - +3.0 1,317,867 - -0.6 1,317,867 - +0.2 1,317,867 - +0.1 1,317,935 + -1.9 1,317,936 - -1.3 1,318,039 + +0.2 1,318,114 + SMa2339 0.12 +0.3 1,318,292 + SMa2339 0.28 -0.4 1,318,513 + +1.0 1,318,602 + SMa2339 0.55 -2.3 1,318,689 + SMa2339 0.63 +1.0 1,318,690 - SMa2339 0.63 -0.4 1,318,695 - SMa2339 0.64 +0.9 1,318,744 + SMa2339 0.68 +0.7 1,318,745 - SMa2339 0.68 +1.4 1,318,745 - SMa2339 0.68 +0.1 1,318,793 - SMa2339 0.73 +0.2 1,318,814 + SMa2339 0.74 -0.3 1,318,814 + SMa2339 0.74 +0.6 1,318,815 - SMa2339 0.75 +1.3 1,318,815 - SMa2339 0.75 -0.6 1,319,173 + -0.4 1,319,200 + +0.4 1,319,313 + -0.7 1,319,313 + +0.8 1,319,313 + -1.0 1,319,313 + -1.4 1,319,582 - SMa2341 0.32 +1.0 1,319,613 + SMa2341 0.35 -0.8 1,319,613 + SMa2341 0.35 +1.7 1,319,613 + SMa2341 0.35 +1.8 1,319,613 + SMa2341 0.35 -0.5 1,319,614 - SMa2341 0.36 -1.5 1,319,671 + SMa2341 0.42 -1.6 1,319,671 + SMa2341 0.42 -0.3 1,319,671 + SMa2341 0.42 -0.8 1,319,730 - SMa2341 0.49 +0.7 1,319,886 - SMa2341 0.66 +0.1 1,319,886 - SMa2341 0.66 -1.6
Or see this region's nucleotide sequence