Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa2293 and SMa2294 are separated by 310 nucleotides SMa2294 and SMa2295 are separated by 177 nucleotides
SMa2293: SMa2293 - beta lactamase transcriptional activator, at 1,274,593 to 1,275,477
SMa2293
SMa2294: SMa2294 - MrcA2 penicillin-binding protein, at 1,275,788 to 1,277,974
SMa2294
SMa2295: SMa2295 - penicillin-binding protein, at 1,278,152 to 1,279,483
SMa2295
Position (kb)
1275
1276
1277
1278 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1274.903 kb on + strand, within SMa2293 at 1274.904 kb on - strand, within SMa2293 at 1274.912 kb on - strand, within SMa2293 at 1274.912 kb on - strand, within SMa2293 at 1275.087 kb on + strand, within SMa2293 at 1275.087 kb on + strand, within SMa2293 at 1275.087 kb on + strand, within SMa2293 at 1275.088 kb on - strand, within SMa2293 at 1275.227 kb on - strand, within SMa2293 at 1275.251 kb on - strand, within SMa2293 at 1275.251 kb on - strand, within SMa2293 at 1275.262 kb on + strand, within SMa2293 at 1275.388 kb on + strand, within SMa2293 at 1275.547 kb on - strand at 1275.805 kb on + strand at 1275.806 kb on - strand at 1275.806 kb on - strand at 1275.838 kb on + strand at 1275.838 kb on + strand at 1275.839 kb on - strand at 1275.860 kb on + strand at 1275.860 kb on + strand at 1275.944 kb on + strand at 1275.944 kb on + strand at 1275.944 kb on + strand at 1275.945 kb on - strand at 1275.969 kb on - strand at 1276.000 kb on - strand at 1276.059 kb on - strand, within SMa2294 at 1276.059 kb on - strand, within SMa2294 at 1276.059 kb on - strand, within SMa2294 at 1276.283 kb on + strand, within SMa2294 at 1276.283 kb on + strand, within SMa2294 at 1276.283 kb on + strand, within SMa2294 at 1276.284 kb on - strand, within SMa2294 at 1276.284 kb on - strand, within SMa2294 at 1276.298 kb on + strand, within SMa2294 at 1276.299 kb on - strand, within SMa2294 at 1276.299 kb on - strand, within SMa2294 at 1276.316 kb on + strand, within SMa2294 at 1276.317 kb on - strand, within SMa2294 at 1276.388 kb on + strand, within SMa2294 at 1276.388 kb on + strand, within SMa2294 at 1276.421 kb on + strand, within SMa2294 at 1276.422 kb on - strand, within SMa2294 at 1276.422 kb on - strand, within SMa2294 at 1276.422 kb on - strand, within SMa2294 at 1276.422 kb on - strand, within SMa2294 at 1276.422 kb on - strand, within SMa2294 at 1276.422 kb on - strand, within SMa2294 at 1276.547 kb on - strand, within SMa2294 at 1276.954 kb on + strand, within SMa2294 at 1276.955 kb on - strand, within SMa2294 at 1276.996 kb on + strand, within SMa2294 at 1276.996 kb on + strand, within SMa2294 at 1276.997 kb on - strand, within SMa2294 at 1277.045 kb on + strand, within SMa2294 at 1277.094 kb on + strand, within SMa2294 at 1277.095 kb on - strand, within SMa2294 at 1277.095 kb on - strand, within SMa2294 at 1277.126 kb on - strand, within SMa2294 at 1277.336 kb on + strand, within SMa2294 at 1277.336 kb on + strand, within SMa2294 at 1277.337 kb on - strand, within SMa2294 at 1277.337 kb on - strand, within SMa2294 at 1277.337 kb on - strand, within SMa2294 at 1277.337 kb on - strand, within SMa2294 at 1277.468 kb on + strand, within SMa2294 at 1277.469 kb on - strand, within SMa2294 at 1277.469 kb on - strand, within SMa2294 at 1277.486 kb on + strand, within SMa2294 at 1277.543 kb on + strand, within SMa2294 at 1277.544 kb on - strand, within SMa2294 at 1277.617 kb on + strand, within SMa2294 at 1277.735 kb on + strand, within SMa2294 at 1277.736 kb on - strand, within SMa2294 at 1277.865 kb on - strand at 1277.901 kb on - strand at 1278.098 kb on + strand at 1278.098 kb on + strand at 1278.099 kb on - strand at 1278.164 kb on + strand at 1278.164 kb on + strand at 1278.164 kb on + strand at 1278.233 kb on + strand at 1278.260 kb on - strand at 1278.504 kb on + strand, within SMa2295 at 1278.505 kb on - strand, within SMa2295 at 1278.522 kb on - strand, within SMa2295 at 1278.573 kb on + strand, within SMa2295 at 1278.723 kb on - strand, within SMa2295 at 1278.734 kb on + strand, within SMa2295 at 1278.735 kb on - strand, within SMa2295 at 1278.736 kb on + strand, within SMa2295
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,274,903 + SMa2293 0.35 +1.1 1,274,904 - SMa2293 0.35 -0.7 1,274,912 - SMa2293 0.36 -0.2 1,274,912 - SMa2293 0.36 -1.2 1,275,087 + SMa2293 0.56 +0.1 1,275,087 + SMa2293 0.56 +1.0 1,275,087 + SMa2293 0.56 -3.0 1,275,088 - SMa2293 0.56 +0.9 1,275,227 - SMa2293 0.72 -1.3 1,275,251 - SMa2293 0.74 -0.7 1,275,251 - SMa2293 0.74 +1.1 1,275,262 + SMa2293 0.76 -0.9 1,275,388 + SMa2293 0.90 +1.0 1,275,547 - +1.4 1,275,805 + -0.7 1,275,806 - -0.4 1,275,806 - -1.4 1,275,838 + +1.6 1,275,838 + +0.7 1,275,839 - +0.3 1,275,860 + -0.5 1,275,860 + +1.5 1,275,944 + -0.7 1,275,944 + +0.8 1,275,944 + +1.0 1,275,945 - -2.5 1,275,969 - -1.1 1,276,000 - -0.7 1,276,059 - SMa2294 0.12 -0.2 1,276,059 - SMa2294 0.12 +0.6 1,276,059 - SMa2294 0.12 -1.0 1,276,283 + SMa2294 0.23 -0.5 1,276,283 + SMa2294 0.23 -0.9 1,276,283 + SMa2294 0.23 -1.1 1,276,284 - SMa2294 0.23 -1.5 1,276,284 - SMa2294 0.23 +0.1 1,276,298 + SMa2294 0.23 -1.4 1,276,299 - SMa2294 0.23 -0.4 1,276,299 - SMa2294 0.23 -1.2 1,276,316 + SMa2294 0.24 -1.5 1,276,317 - SMa2294 0.24 -1.6 1,276,388 + SMa2294 0.27 +1.4 1,276,388 + SMa2294 0.27 +1.0 1,276,421 + SMa2294 0.29 -0.8 1,276,422 - SMa2294 0.29 +0.4 1,276,422 - SMa2294 0.29 -0.9 1,276,422 - SMa2294 0.29 +1.4 1,276,422 - SMa2294 0.29 -0.9 1,276,422 - SMa2294 0.29 -0.6 1,276,422 - SMa2294 0.29 +0.7 1,276,547 - SMa2294 0.35 -1.0 1,276,954 + SMa2294 0.53 -0.2 1,276,955 - SMa2294 0.53 -0.0 1,276,996 + SMa2294 0.55 -1.8 1,276,996 + SMa2294 0.55 -0.7 1,276,997 - SMa2294 0.55 -0.4 1,277,045 + SMa2294 0.57 -1.7 1,277,094 + SMa2294 0.60 -1.6 1,277,095 - SMa2294 0.60 +0.2 1,277,095 - SMa2294 0.60 -0.6 1,277,126 - SMa2294 0.61 -0.0 1,277,336 + SMa2294 0.71 +0.7 1,277,336 + SMa2294 0.71 +0.1 1,277,337 - SMa2294 0.71 -0.8 1,277,337 - SMa2294 0.71 -0.1 1,277,337 - SMa2294 0.71 +0.3 1,277,337 - SMa2294 0.71 -0.6 1,277,468 + SMa2294 0.77 +0.8 1,277,469 - SMa2294 0.77 +2.1 1,277,469 - SMa2294 0.77 +1.1 1,277,486 + SMa2294 0.78 +0.1 1,277,543 + SMa2294 0.80 -1.4 1,277,544 - SMa2294 0.80 -0.1 1,277,617 + SMa2294 0.84 -0.5 1,277,735 + SMa2294 0.89 +0.4 1,277,736 - SMa2294 0.89 -0.1 1,277,865 - -0.4 1,277,901 - -0.2 1,278,098 + -0.2 1,278,098 + +0.2 1,278,099 - +1.6 1,278,164 + -1.4 1,278,164 + +0.2 1,278,164 + +1.5 1,278,233 + -1.9 1,278,260 - -0.7 1,278,504 + SMa2295 0.26 -2.9 1,278,505 - SMa2295 0.27 +0.3 1,278,522 - SMa2295 0.28 +1.3 1,278,573 + SMa2295 0.32 -0.9 1,278,723 - SMa2295 0.43 -0.6 1,278,734 + SMa2295 0.44 -1.7 1,278,735 - SMa2295 0.44 +0.7 1,278,736 + SMa2295 0.44 -1.9
Or see this region's nucleotide sequence