Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1890 and SMa1891 overlap by 83 nucleotides SMa1891 and SMa1893 are separated by 78 nucleotides SMa1893 and SMa1894 are separated by 109 nucleotides SMa1894 and SMa1896 are separated by 0 nucleotides
SMa1890: SMa1890 - oxidoreductase, at 1,074,958 to 1,075,602
SMa1890
SMa1891: SMa1891 - thioredoxin reductase, at 1,075,520 to 1,075,816
SMa1891
SMa1893: SMa1893 - LysR family transcriptional regulator, at 1,075,895 to 1,076,770
SMa1893
SMa1894: SMa1894 - methionine sulfoxide reductase B, at 1,076,880 to 1,077,323
SMa1894
SMa1896: SMa1896 - methionine sulfoxide reductase A, at 1,077,324 to 1,077,830
SMa1896
Position (kb)
1075
1076
1077 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 1075.177 kb on + strand, within SMa1890 at 1075.177 kb on + strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.178 kb on - strand, within SMa1890 at 1075.247 kb on + strand, within SMa1890 at 1075.389 kb on - strand, within SMa1890 at 1075.389 kb on - strand, within SMa1890 at 1075.916 kb on + strand at 1076.040 kb on - strand, within SMa1893 at 1076.168 kb on - strand, within SMa1893 at 1076.275 kb on - strand, within SMa1893 at 1076.315 kb on + strand, within SMa1893 at 1076.315 kb on + strand, within SMa1893 at 1076.316 kb on - strand, within SMa1893 at 1076.316 kb on - strand, within SMa1893 at 1076.326 kb on + strand, within SMa1893 at 1076.327 kb on - strand, within SMa1893 at 1076.327 kb on - strand, within SMa1893 at 1076.327 kb on - strand, within SMa1893 at 1076.463 kb on - strand, within SMa1893 at 1076.469 kb on - strand, within SMa1893 at 1076.659 kb on - strand, within SMa1893 at 1076.802 kb on + strand at 1076.802 kb on + strand at 1076.803 kb on - strand at 1076.803 kb on - strand at 1076.803 kb on - strand at 1076.803 kb on - strand at 1076.887 kb on - strand at 1076.918 kb on + strand at 1076.919 kb on - strand at 1076.980 kb on - strand, within SMa1894 at 1077.006 kb on + strand, within SMa1894 at 1077.006 kb on + strand, within SMa1894 at 1077.228 kb on + strand, within SMa1894 at 1077.228 kb on + strand, within SMa1894 at 1077.288 kb on + strand at 1077.417 kb on + strand, within SMa1896 at 1077.447 kb on + strand, within SMa1896 at 1077.591 kb on + strand, within SMa1896 at 1077.591 kb on + strand, within SMa1896 at 1077.606 kb on + strand, within SMa1896 at 1077.606 kb on + strand, within SMa1896 at 1077.606 kb on + strand, within SMa1896 at 1077.606 kb on + strand, within SMa1896 at 1077.607 kb on - strand, within SMa1896 at 1077.748 kb on - strand, within SMa1896 at 1077.748 kb on - strand, within SMa1896
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,075,177 + SMa1890 0.34 +0.0 1,075,177 + SMa1890 0.34 +3.4 1,075,178 - SMa1890 0.34 -0.9 1,075,178 - SMa1890 0.34 -0.0 1,075,178 - SMa1890 0.34 -0.9 1,075,178 - SMa1890 0.34 -0.6 1,075,178 - SMa1890 0.34 +0.8 1,075,178 - SMa1890 0.34 +0.7 1,075,178 - SMa1890 0.34 +1.0 1,075,178 - SMa1890 0.34 -1.1 1,075,247 + SMa1890 0.45 +4.5 1,075,389 - SMa1890 0.67 -0.9 1,075,389 - SMa1890 0.67 -0.3 1,075,916 + -1.7 1,076,040 - SMa1893 0.17 -1.6 1,076,168 - SMa1893 0.31 -0.9 1,076,275 - SMa1893 0.43 +0.2 1,076,315 + SMa1893 0.48 -0.7 1,076,315 + SMa1893 0.48 -0.3 1,076,316 - SMa1893 0.48 -1.8 1,076,316 - SMa1893 0.48 -1.1 1,076,326 + SMa1893 0.49 -0.5 1,076,327 - SMa1893 0.49 +1.4 1,076,327 - SMa1893 0.49 -1.6 1,076,327 - SMa1893 0.49 -0.5 1,076,463 - SMa1893 0.65 -1.5 1,076,469 - SMa1893 0.66 -2.3 1,076,659 - SMa1893 0.87 +0.7 1,076,802 + -0.3 1,076,802 + -0.9 1,076,803 - -1.4 1,076,803 - -0.1 1,076,803 - -1.7 1,076,803 - +0.6 1,076,887 - +4.5 1,076,918 + -1.1 1,076,919 - -0.1 1,076,980 - SMa1894 0.23 -1.6 1,077,006 + SMa1894 0.28 -0.8 1,077,006 + SMa1894 0.28 +0.9 1,077,228 + SMa1894 0.78 -2.1 1,077,228 + SMa1894 0.78 -1.3 1,077,288 + -1.6 1,077,417 + SMa1896 0.18 +1.2 1,077,447 + SMa1896 0.24 -0.7 1,077,591 + SMa1896 0.53 -0.9 1,077,591 + SMa1896 0.53 -0.2 1,077,606 + SMa1896 0.56 +0.6 1,077,606 + SMa1896 0.56 -0.1 1,077,606 + SMa1896 0.56 -0.7 1,077,606 + SMa1896 0.56 -0.8 1,077,607 - SMa1896 0.56 +2.6 1,077,748 - SMa1896 0.84 +1.9 1,077,748 - SMa1896 0.84 -0.1
Or see this region's nucleotide sequence