Strain Fitness in Sinorhizobium meliloti 1021 around SMa1893

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1890 and SMa1891 overlap by 83 nucleotidesSMa1891 and SMa1893 are separated by 78 nucleotidesSMa1893 and SMa1894 are separated by 109 nucleotidesSMa1894 and SMa1896 are separated by 0 nucleotides SMa1890: SMa1890 - oxidoreductase, at 1,074,958 to 1,075,602 SMa1890 SMa1891: SMa1891 - thioredoxin reductase, at 1,075,520 to 1,075,816 SMa1891 SMa1893: SMa1893 - LysR family transcriptional regulator, at 1,075,895 to 1,076,770 SMa1893 SMa1894: SMa1894 - methionine sulfoxide reductase B, at 1,076,880 to 1,077,323 SMa1894 SMa1896: SMa1896 - methionine sulfoxide reductase A, at 1,077,324 to 1,077,830 SMa1896 Position (kb) 1075 1076 1077Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1075.177 kb on + strand, within SMa1890at 1075.177 kb on + strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.178 kb on - strand, within SMa1890at 1075.247 kb on + strand, within SMa1890at 1075.389 kb on - strand, within SMa1890at 1075.389 kb on - strand, within SMa1890at 1075.916 kb on + strandat 1076.040 kb on - strand, within SMa1893at 1076.168 kb on - strand, within SMa1893at 1076.275 kb on - strand, within SMa1893at 1076.315 kb on + strand, within SMa1893at 1076.315 kb on + strand, within SMa1893at 1076.316 kb on - strand, within SMa1893at 1076.316 kb on - strand, within SMa1893at 1076.326 kb on + strand, within SMa1893at 1076.327 kb on - strand, within SMa1893at 1076.327 kb on - strand, within SMa1893at 1076.327 kb on - strand, within SMa1893at 1076.463 kb on - strand, within SMa1893at 1076.469 kb on - strand, within SMa1893at 1076.659 kb on - strand, within SMa1893at 1076.802 kb on + strandat 1076.802 kb on + strandat 1076.803 kb on - strandat 1076.803 kb on - strandat 1076.803 kb on - strandat 1076.803 kb on - strandat 1076.887 kb on - strandat 1076.918 kb on + strandat 1076.919 kb on - strandat 1076.980 kb on - strand, within SMa1894at 1077.006 kb on + strand, within SMa1894at 1077.006 kb on + strand, within SMa1894at 1077.228 kb on + strand, within SMa1894at 1077.228 kb on + strand, within SMa1894at 1077.288 kb on + strandat 1077.417 kb on + strand, within SMa1896at 1077.447 kb on + strand, within SMa1896at 1077.591 kb on + strand, within SMa1896at 1077.591 kb on + strand, within SMa1896at 1077.606 kb on + strand, within SMa1896at 1077.606 kb on + strand, within SMa1896at 1077.606 kb on + strand, within SMa1896at 1077.606 kb on + strand, within SMa1896at 1077.607 kb on - strand, within SMa1896at 1077.748 kb on - strand, within SMa1896at 1077.748 kb on - strand, within SMa1896

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,075,177 + SMa1890 0.34 +0.0
1,075,177 + SMa1890 0.34 +3.4
1,075,178 - SMa1890 0.34 -0.9
1,075,178 - SMa1890 0.34 -0.0
1,075,178 - SMa1890 0.34 -0.9
1,075,178 - SMa1890 0.34 -0.6
1,075,178 - SMa1890 0.34 +0.8
1,075,178 - SMa1890 0.34 +0.7
1,075,178 - SMa1890 0.34 +1.0
1,075,178 - SMa1890 0.34 -1.1
1,075,247 + SMa1890 0.45 +4.5
1,075,389 - SMa1890 0.67 -0.9
1,075,389 - SMa1890 0.67 -0.3
1,075,916 + -1.7
1,076,040 - SMa1893 0.17 -1.6
1,076,168 - SMa1893 0.31 -0.9
1,076,275 - SMa1893 0.43 +0.2
1,076,315 + SMa1893 0.48 -0.7
1,076,315 + SMa1893 0.48 -0.3
1,076,316 - SMa1893 0.48 -1.8
1,076,316 - SMa1893 0.48 -1.1
1,076,326 + SMa1893 0.49 -0.5
1,076,327 - SMa1893 0.49 +1.4
1,076,327 - SMa1893 0.49 -1.6
1,076,327 - SMa1893 0.49 -0.5
1,076,463 - SMa1893 0.65 -1.5
1,076,469 - SMa1893 0.66 -2.3
1,076,659 - SMa1893 0.87 +0.7
1,076,802 + -0.3
1,076,802 + -0.9
1,076,803 - -1.4
1,076,803 - -0.1
1,076,803 - -1.7
1,076,803 - +0.6
1,076,887 - +4.5
1,076,918 + -1.1
1,076,919 - -0.1
1,076,980 - SMa1894 0.23 -1.6
1,077,006 + SMa1894 0.28 -0.8
1,077,006 + SMa1894 0.28 +0.9
1,077,228 + SMa1894 0.78 -2.1
1,077,228 + SMa1894 0.78 -1.3
1,077,288 + -1.6
1,077,417 + SMa1896 0.18 +1.2
1,077,447 + SMa1896 0.24 -0.7
1,077,591 + SMa1896 0.53 -0.9
1,077,591 + SMa1896 0.53 -0.2
1,077,606 + SMa1896 0.56 +0.6
1,077,606 + SMa1896 0.56 -0.1
1,077,606 + SMa1896 0.56 -0.7
1,077,606 + SMa1896 0.56 -0.8
1,077,607 - SMa1896 0.56 +2.6
1,077,748 - SMa1896 0.84 +1.9
1,077,748 - SMa1896 0.84 -0.1

Or see this region's nucleotide sequence