Strain Fitness in Sinorhizobium meliloti 1021 around SMa1871

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1869 and SMa1871 are separated by 234 nucleotidesSMa1871 and SMa1872 are separated by 5 nucleotides SMa1869: SMa1869 - deaminase, at 1,060,923 to 1,062,248 SMa1869 SMa1871: SMa1871 - cyclodeaminase, at 1,062,483 to 1,063,475 SMa1871 SMa1872: SMa1872 - threonine dehydratase, at 1,063,481 to 1,064,452 SMa1872 Position (kb) 1062 1063 1064Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1061.977 kb on + strand, within SMa1869at 1061.978 kb on - strand, within SMa1869at 1061.978 kb on - strand, within SMa1869at 1062.076 kb on + strand, within SMa1869at 1062.155 kb on + strandat 1062.195 kb on + strandat 1062.356 kb on - strandat 1062.395 kb on + strandat 1062.396 kb on - strandat 1062.416 kb on - strandat 1062.469 kb on + strandat 1062.470 kb on - strandat 1062.514 kb on + strandat 1062.523 kb on + strandat 1062.564 kb on + strandat 1062.564 kb on + strandat 1062.605 kb on + strand, within SMa1871at 1062.614 kb on - strand, within SMa1871at 1062.614 kb on - strand, within SMa1871at 1062.657 kb on + strand, within SMa1871at 1062.661 kb on - strand, within SMa1871at 1062.661 kb on - strand, within SMa1871at 1062.741 kb on - strand, within SMa1871at 1062.741 kb on - strand, within SMa1871at 1062.745 kb on + strand, within SMa1871at 1062.745 kb on + strand, within SMa1871at 1062.746 kb on - strand, within SMa1871at 1062.903 kb on - strand, within SMa1871at 1063.085 kb on + strand, within SMa1871at 1063.322 kb on - strand, within SMa1871at 1063.322 kb on - strand, within SMa1871at 1063.393 kb on + strandat 1063.393 kb on + strandat 1063.403 kb on + strandat 1063.403 kb on + strandat 1063.442 kb on + strandat 1063.765 kb on - strand, within SMa1872at 1063.867 kb on + strand, within SMa1872at 1063.867 kb on + strand, within SMa1872at 1063.908 kb on - strand, within SMa1872at 1063.975 kb on - strand, within SMa1872at 1064.000 kb on - strand, within SMa1872at 1064.114 kb on + strand, within SMa1872at 1064.115 kb on - strand, within SMa1872at 1064.358 kb on + strandat 1064.358 kb on + strandat 1064.358 kb on + strandat 1064.359 kb on - strandat 1064.359 kb on - strandat 1064.435 kb on + strandat 1064.435 kb on + strandat 1064.436 kb on - strandat 1064.436 kb on - strandat 1064.436 kb on - strandat 1064.443 kb on - strandat 1064.450 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,061,977 + SMa1869 0.79 +0.2
1,061,978 - SMa1869 0.80 +0.6
1,061,978 - SMa1869 0.80 +0.4
1,062,076 + SMa1869 0.87 -0.5
1,062,155 + -1.7
1,062,195 + -0.6
1,062,356 - -2.1
1,062,395 + +0.9
1,062,396 - -0.6
1,062,416 - +2.2
1,062,469 + -0.4
1,062,470 - -0.2
1,062,514 + -0.4
1,062,523 + -0.6
1,062,564 + -1.1
1,062,564 + -0.1
1,062,605 + SMa1871 0.12 +0.8
1,062,614 - SMa1871 0.13 -1.1
1,062,614 - SMa1871 0.13 -2.1
1,062,657 + SMa1871 0.18 -1.6
1,062,661 - SMa1871 0.18 -0.1
1,062,661 - SMa1871 0.18 -0.2
1,062,741 - SMa1871 0.26 +0.2
1,062,741 - SMa1871 0.26 +1.7
1,062,745 + SMa1871 0.26 +0.6
1,062,745 + SMa1871 0.26 +1.7
1,062,746 - SMa1871 0.26 -1.8
1,062,903 - SMa1871 0.42 +0.2
1,063,085 + SMa1871 0.61 +0.8
1,063,322 - SMa1871 0.84 -0.6
1,063,322 - SMa1871 0.84 +1.7
1,063,393 + -0.6
1,063,393 + +0.1
1,063,403 + +2.6
1,063,403 + -2.4
1,063,442 + +0.4
1,063,765 - SMa1872 0.29 +0.4
1,063,867 + SMa1872 0.40 +0.1
1,063,867 + SMa1872 0.40 +1.0
1,063,908 - SMa1872 0.44 -0.5
1,063,975 - SMa1872 0.51 -0.7
1,064,000 - SMa1872 0.53 +0.2
1,064,114 + SMa1872 0.65 -0.5
1,064,115 - SMa1872 0.65 -0.8
1,064,358 + +3.0
1,064,358 + -1.2
1,064,358 + +1.7
1,064,359 - +1.1
1,064,359 - -0.9
1,064,435 + +1.5
1,064,435 + +0.9
1,064,436 - -0.2
1,064,436 - +0.7
1,064,436 - -0.8
1,064,443 - -0.3
1,064,450 + -0.3

Or see this region's nucleotide sequence