Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1869 and SMa1871 are separated by 234 nucleotides SMa1871 and SMa1872 are separated by 5 nucleotides
SMa1869: SMa1869 - deaminase, at 1,060,923 to 1,062,248
SMa1869
SMa1871: SMa1871 - cyclodeaminase, at 1,062,483 to 1,063,475
SMa1871
SMa1872: SMa1872 - threonine dehydratase, at 1,063,481 to 1,064,452
SMa1872
Position (kb)
1062
1063
1064 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1061.977 kb on + strand, within SMa1869 at 1061.978 kb on - strand, within SMa1869 at 1061.978 kb on - strand, within SMa1869 at 1062.076 kb on + strand, within SMa1869 at 1062.155 kb on + strand at 1062.195 kb on + strand at 1062.356 kb on - strand at 1062.395 kb on + strand at 1062.396 kb on - strand at 1062.416 kb on - strand at 1062.469 kb on + strand at 1062.470 kb on - strand at 1062.514 kb on + strand at 1062.523 kb on + strand at 1062.564 kb on + strand at 1062.564 kb on + strand at 1062.605 kb on + strand, within SMa1871 at 1062.614 kb on - strand, within SMa1871 at 1062.614 kb on - strand, within SMa1871 at 1062.657 kb on + strand, within SMa1871 at 1062.661 kb on - strand, within SMa1871 at 1062.661 kb on - strand, within SMa1871 at 1062.741 kb on - strand, within SMa1871 at 1062.741 kb on - strand, within SMa1871 at 1062.745 kb on + strand, within SMa1871 at 1062.745 kb on + strand, within SMa1871 at 1062.746 kb on - strand, within SMa1871 at 1062.903 kb on - strand, within SMa1871 at 1063.085 kb on + strand, within SMa1871 at 1063.322 kb on - strand, within SMa1871 at 1063.322 kb on - strand, within SMa1871 at 1063.393 kb on + strand at 1063.393 kb on + strand at 1063.403 kb on + strand at 1063.403 kb on + strand at 1063.442 kb on + strand at 1063.765 kb on - strand, within SMa1872 at 1063.867 kb on + strand, within SMa1872 at 1063.867 kb on + strand, within SMa1872 at 1063.908 kb on - strand, within SMa1872 at 1063.975 kb on - strand, within SMa1872 at 1064.000 kb on - strand, within SMa1872 at 1064.114 kb on + strand, within SMa1872 at 1064.115 kb on - strand, within SMa1872 at 1064.358 kb on + strand at 1064.358 kb on + strand at 1064.358 kb on + strand at 1064.359 kb on - strand at 1064.359 kb on - strand at 1064.435 kb on + strand at 1064.435 kb on + strand at 1064.436 kb on - strand at 1064.436 kb on - strand at 1064.436 kb on - strand at 1064.443 kb on - strand at 1064.450 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,061,977 + SMa1869 0.79 +0.2 1,061,978 - SMa1869 0.80 +0.6 1,061,978 - SMa1869 0.80 +0.4 1,062,076 + SMa1869 0.87 -0.5 1,062,155 + -1.7 1,062,195 + -0.6 1,062,356 - -2.1 1,062,395 + +0.9 1,062,396 - -0.6 1,062,416 - +2.2 1,062,469 + -0.4 1,062,470 - -0.2 1,062,514 + -0.4 1,062,523 + -0.6 1,062,564 + -1.1 1,062,564 + -0.1 1,062,605 + SMa1871 0.12 +0.8 1,062,614 - SMa1871 0.13 -1.1 1,062,614 - SMa1871 0.13 -2.1 1,062,657 + SMa1871 0.18 -1.6 1,062,661 - SMa1871 0.18 -0.1 1,062,661 - SMa1871 0.18 -0.2 1,062,741 - SMa1871 0.26 +0.2 1,062,741 - SMa1871 0.26 +1.7 1,062,745 + SMa1871 0.26 +0.6 1,062,745 + SMa1871 0.26 +1.7 1,062,746 - SMa1871 0.26 -1.8 1,062,903 - SMa1871 0.42 +0.2 1,063,085 + SMa1871 0.61 +0.8 1,063,322 - SMa1871 0.84 -0.6 1,063,322 - SMa1871 0.84 +1.7 1,063,393 + -0.6 1,063,393 + +0.1 1,063,403 + +2.6 1,063,403 + -2.4 1,063,442 + +0.4 1,063,765 - SMa1872 0.29 +0.4 1,063,867 + SMa1872 0.40 +0.1 1,063,867 + SMa1872 0.40 +1.0 1,063,908 - SMa1872 0.44 -0.5 1,063,975 - SMa1872 0.51 -0.7 1,064,000 - SMa1872 0.53 +0.2 1,064,114 + SMa1872 0.65 -0.5 1,064,115 - SMa1872 0.65 -0.8 1,064,358 + +3.0 1,064,358 + -1.2 1,064,358 + +1.7 1,064,359 - +1.1 1,064,359 - -0.9 1,064,435 + +1.5 1,064,435 + +0.9 1,064,436 - -0.2 1,064,436 - +0.7 1,064,436 - -0.8 1,064,443 - -0.3 1,064,450 + -0.3
Or see this region's nucleotide sequence