Strain Fitness in Sinorhizobium meliloti 1021 around SMa1037

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMa1032 and SMa1033 are separated by 197 nucleotidesSMa1033 and SMa1036 are separated by 52 nucleotidesSMa1036 and SMa1037 overlap by 4 nucleotidesSMa1037 and SMa1038 are separated by 14 nucleotides SMa1032: SMa1032 - hypothetical protein, at 569,367 to 569,612 SMa1032 SMa1033: SMa1033 - hypothetical protein, at 569,810 to 570,190 SMa1033 SMa1036: SMa1036 - hypothetical protein, at 570,243 to 570,512 SMa1036 SMa1037: SMa1037 - hypothetical protein, at 570,509 to 571,975 SMa1037 SMa1038: SMa1038 - copper-containing oxidase, at 571,990 to 573,339 SMa1038 Position (kb) 570 571 572Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 569.671 kb on - strandat 569.688 kb on + strandat 569.727 kb on - strandat 569.798 kb on + strandat 569.799 kb on - strandat 569.799 kb on - strandat 569.815 kb on + strandat 569.815 kb on + strandat 569.816 kb on - strandat 569.941 kb on + strand, within SMa1033at 569.942 kb on - strand, within SMa1033at 569.986 kb on + strand, within SMa1033at 569.987 kb on - strand, within SMa1033at 569.987 kb on - strand, within SMa1033at 569.987 kb on - strand, within SMa1033at 570.088 kb on + strand, within SMa1033at 570.088 kb on + strand, within SMa1033at 570.089 kb on - strand, within SMa1033at 570.091 kb on + strand, within SMa1033at 570.193 kb on - strandat 570.412 kb on - strand, within SMa1036at 570.412 kb on - strand, within SMa1036at 570.413 kb on + strand, within SMa1036at 570.413 kb on + strand, within SMa1036at 570.414 kb on - strand, within SMa1036at 570.414 kb on - strand, within SMa1036at 570.694 kb on - strand, within SMa1037at 570.791 kb on + strand, within SMa1037at 570.946 kb on + strand, within SMa1037at 571.451 kb on + strandat 571.452 kb on - strand, within SMa1037at 571.474 kb on + strand, within SMa1037at 571.607 kb on + strand, within SMa1037at 571.607 kb on + strand, within SMa1037at 571.609 kb on + strand, within SMa1037at 571.610 kb on - strand, within SMa1037at 571.610 kb on - strand, within SMa1037at 571.610 kb on - strand, within SMa1037at 571.770 kb on - strand, within SMa1037at 572.064 kb on + strandat 572.119 kb on - strandat 572.141 kb on - strandat 572.142 kb on + strand, within SMa1038at 572.143 kb on - strand, within SMa1038at 572.491 kb on + strand, within SMa1038at 572.491 kb on + strand, within SMa1038at 572.491 kb on + strand, within SMa1038at 572.492 kb on - strand, within SMa1038at 572.614 kb on + strand, within SMa1038at 572.614 kb on + strand, within SMa1038at 572.614 kb on + strand, within SMa1038at 572.615 kb on - strand, within SMa1038at 572.615 kb on - strand, within SMa1038at 572.635 kb on + strand, within SMa1038at 572.635 kb on + strand, within SMa1038at 572.635 kb on + strand, within SMa1038at 572.636 kb on - strand, within SMa1038at 572.636 kb on - strand, within SMa1038at 572.670 kb on + strand, within SMa1038at 572.671 kb on - strand, within SMa1038at 572.671 kb on - strand, within SMa1038at 572.671 kb on - strand, within SMa1038at 572.671 kb on - strand, within SMa1038at 572.685 kb on + strand, within SMa1038at 572.686 kb on - strand, within SMa1038at 572.815 kb on - strand, within SMa1038

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
569,671 - +0.8
569,688 + -0.7
569,727 - +0.5
569,798 + -1.3
569,799 - +2.6
569,799 - +1.2
569,815 + +1.4
569,815 + -0.6
569,816 - -0.3
569,941 + SMa1033 0.34 -0.2
569,942 - SMa1033 0.35 -0.9
569,986 + SMa1033 0.46 -1.4
569,987 - SMa1033 0.46 +0.5
569,987 - SMa1033 0.46 -0.0
569,987 - SMa1033 0.46 -1.4
570,088 + SMa1033 0.73 -0.4
570,088 + SMa1033 0.73 -0.4
570,089 - SMa1033 0.73 -1.1
570,091 + SMa1033 0.74 -0.4
570,193 - +0.5
570,412 - SMa1036 0.63 -0.9
570,412 - SMa1036 0.63 -1.2
570,413 + SMa1036 0.63 -0.1
570,413 + SMa1036 0.63 -0.5
570,414 - SMa1036 0.63 +1.8
570,414 - SMa1036 0.63 -0.9
570,694 - SMa1037 0.13 -0.1
570,791 + SMa1037 0.19 -0.3
570,946 + SMa1037 0.30 +0.2
571,451 + +2.8
571,452 - SMa1037 0.64 +1.1
571,474 + SMa1037 0.66 -1.8
571,607 + SMa1037 0.75 -0.9
571,607 + SMa1037 0.75 +0.5
571,609 + SMa1037 0.75 +1.2
571,610 - SMa1037 0.75 +0.7
571,610 - SMa1037 0.75 -0.0
571,610 - SMa1037 0.75 -2.1
571,770 - SMa1037 0.86 +1.1
572,064 + -1.3
572,119 - -0.1
572,141 - +4.4
572,142 + SMa1038 0.11 +2.8
572,143 - SMa1038 0.11 -1.1
572,491 + SMa1038 0.37 +0.5
572,491 + SMa1038 0.37 -0.8
572,491 + SMa1038 0.37 -0.2
572,492 - SMa1038 0.37 -1.0
572,614 + SMa1038 0.46 +0.4
572,614 + SMa1038 0.46 -0.3
572,614 + SMa1038 0.46 +0.3
572,615 - SMa1038 0.46 -0.2
572,615 - SMa1038 0.46 -0.7
572,635 + SMa1038 0.48 +1.8
572,635 + SMa1038 0.48 -0.9
572,635 + SMa1038 0.48 -0.7
572,636 - SMa1038 0.48 -0.3
572,636 - SMa1038 0.48 -0.8
572,670 + SMa1038 0.50 +0.6
572,671 - SMa1038 0.50 -0.6
572,671 - SMa1038 0.50 -0.3
572,671 - SMa1038 0.50 +0.6
572,671 - SMa1038 0.50 -1.6
572,685 + SMa1038 0.51 +0.5
572,686 - SMa1038 0.52 -0.5
572,815 - SMa1038 0.61 -0.6

Or see this region's nucleotide sequence