Strain Fitness in Sinorhizobium meliloti 1021 around SMa0998

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0997 and SMa0998 are separated by 23 nucleotidesSMa0998 and SMa1001 are separated by 348 nucleotides SMa0997: SMa0997 - transposase, fragment, at 553,196 to 553,492 SMa0997 SMa0998: SMa0998 - ISRm25b transposase, at 553,516 to 554,085 SMa0998 SMa1001: SMa1001 - hypothetical protein, at 554,434 to 555,633 SMa1001 Position (kb) 553 554 555Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 552.613 kb on + strandat 552.614 kb on - strandat 552.614 kb on - strandat 552.720 kb on + strandat 552.767 kb on - strandat 552.809 kb on - strandat 552.816 kb on + strandat 552.816 kb on + strandat 552.822 kb on + strandat 552.823 kb on - strandat 552.832 kb on + strandat 552.832 kb on + strandat 552.845 kb on - strandat 552.845 kb on - strandat 552.870 kb on + strandat 552.871 kb on - strandat 552.871 kb on - strandat 553.061 kb on + strandat 553.062 kb on - strandat 553.444 kb on + strand, within SMa0997at 553.513 kb on + strandat 553.513 kb on + strandat 553.513 kb on + strandat 553.513 kb on + strandat 553.514 kb on - strandat 553.514 kb on - strandat 553.514 kb on - strandat 553.514 kb on - strandat 553.666 kb on + strand, within SMa0998at 553.687 kb on + strand, within SMa0998at 553.687 kb on + strand, within SMa0998at 553.827 kb on - strand, within SMa0998at 554.049 kb on + strandat 554.050 kb on - strandat 554.050 kb on - strandat 554.050 kb on - strandat 554.050 kb on - strandat 554.050 kb on - strandat 554.052 kb on + strandat 554.053 kb on - strandat 554.166 kb on - strandat 554.340 kb on + strandat 554.340 kb on + strandat 554.341 kb on - strandat 554.341 kb on - strandat 554.341 kb on - strandat 554.341 kb on - strandat 554.341 kb on - strandat 554.341 kb on - strandat 554.344 kb on + strandat 554.374 kb on - strandat 554.375 kb on + strandat 554.376 kb on - strandat 554.376 kb on - strandat 554.379 kb on + strandat 554.379 kb on + strandat 554.380 kb on - strandat 554.380 kb on - strandat 554.385 kb on - strandat 554.969 kb on + strand, within SMa1001

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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552,613 + +0.0
552,614 - -2.3
552,614 - +0.0
552,720 + +0.6
552,767 - +0.8
552,809 - -0.9
552,816 + -0.4
552,816 + +0.7
552,822 + -1.1
552,823 - +1.5
552,832 + +0.5
552,832 + -0.1
552,845 - +0.4
552,845 - +0.1
552,870 + +0.2
552,871 - +0.9
552,871 - +0.4
553,061 + -0.6
553,062 - -1.0
553,444 + SMa0997 0.84 -0.8
553,513 + -0.8
553,513 + -1.7
553,513 + -0.4
553,513 + -0.6
553,514 - -1.3
553,514 - -1.6
553,514 - +0.0
553,514 - -0.8
553,666 + SMa0998 0.26 -2.9
553,687 + SMa0998 0.30 -0.4
553,687 + SMa0998 0.30 -0.4
553,827 - SMa0998 0.55 +0.1
554,049 + -0.8
554,050 - -0.0
554,050 - -1.1
554,050 - +1.3
554,050 - -2.5
554,050 - +0.4
554,052 + +0.2
554,053 - +1.2
554,166 - -0.6
554,340 + -0.7
554,340 + +0.2
554,341 - +0.8
554,341 - -0.9
554,341 - -0.7
554,341 - -0.6
554,341 - +1.0
554,341 - +1.0
554,344 + -0.7
554,374 - -0.1
554,375 + -0.7
554,376 - -1.1
554,376 - +2.5
554,379 + +1.8
554,379 + +0.1
554,380 - +2.5
554,380 - +1.3
554,385 - +1.2
554,969 + SMa1001 0.45 -0.8

Or see this region's nucleotide sequence