Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0875 and SMa0876 are separated by 3 nucleotides SMa0876 and SMa0878 are separated by 57 nucleotides
SMa0875: SMa0875 - NolG efflux transporter, at 485,661 to 488,858
SMa0875
SMa0876: SMa0876 - NolF secretion protein, at 488,862 to 489,965
SMa0876
SMa0878: SMa0878 - glucosamine--fructose-6-phosphate aminotransferase, at 490,023 to 491,849
SMa0878
Position (kb) 488
489
490 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 488.039 kb on - strand, within SMa0875 at 488.039 kb on - strand, within SMa0875 at 488.201 kb on + strand, within SMa0875 at 488.201 kb on + strand, within SMa0875 at 488.272 kb on + strand, within SMa0875 at 488.272 kb on + strand, within SMa0875 at 488.357 kb on + strand, within SMa0875 at 488.357 kb on + strand, within SMa0875 at 488.358 kb on - strand, within SMa0875 at 488.358 kb on - strand, within SMa0875 at 488.358 kb on - strand, within SMa0875 at 488.605 kb on + strand at 488.707 kb on + strand at 488.707 kb on + strand at 488.708 kb on - strand at 488.708 kb on - strand at 488.774 kb on - strand at 488.816 kb on + strand at 488.843 kb on + strand at 488.844 kb on - strand at 489.105 kb on + strand, within SMa0876 at 489.106 kb on - strand, within SMa0876 at 489.252 kb on + strand, within SMa0876 at 489.264 kb on + strand, within SMa0876 at 489.483 kb on + strand, within SMa0876 at 489.484 kb on - strand, within SMa0876 at 489.718 kb on - strand, within SMa0876 at 489.718 kb on - strand, within SMa0876 at 489.755 kb on + strand, within SMa0876 at 489.755 kb on + strand at 489.755 kb on + strand, within SMa0876 at 489.756 kb on - strand, within SMa0876 at 489.756 kb on - strand, within SMa0876 at 489.774 kb on + strand, within SMa0876 at 489.786 kb on + strand, within SMa0876 at 489.788 kb on + strand, within SMa0876 at 489.789 kb on - strand, within SMa0876 at 489.858 kb on - strand at 489.957 kb on + strand at 489.975 kb on + strand at 489.976 kb on - strand at 490.008 kb on - strand at 490.008 kb on - strand at 490.092 kb on - strand at 490.097 kb on - strand at 490.380 kb on - strand, within SMa0878 at 490.382 kb on - strand, within SMa0878 at 490.382 kb on - strand, within SMa0878 at 490.382 kb on - strand, within SMa0878
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 488,039 - SMa0875 0.74 +0.3 488,039 - SMa0875 0.74 +0.2 488,201 + SMa0875 0.79 -1.2 488,201 + SMa0875 0.79 +0.2 488,272 + SMa0875 0.82 -0.3 488,272 + SMa0875 0.82 +1.8 488,357 + SMa0875 0.84 -0.1 488,357 + SMa0875 0.84 -0.5 488,358 - SMa0875 0.84 +0.1 488,358 - SMa0875 0.84 +1.4 488,358 - SMa0875 0.84 +1.5 488,605 + -0.9 488,707 + -0.4 488,707 + +0.6 488,708 - -2.5 488,708 - +0.2 488,774 - -1.1 488,816 + -3.6 488,843 + +0.2 488,844 - +0.9 489,105 + SMa0876 0.22 +0.2 489,106 - SMa0876 0.22 -3.3 489,252 + SMa0876 0.35 +0.2 489,264 + SMa0876 0.36 -1.2 489,483 + SMa0876 0.56 -1.0 489,484 - SMa0876 0.56 +0.1 489,718 - SMa0876 0.78 -1.6 489,718 - SMa0876 0.78 -0.4 489,755 + SMa0876 0.81 -1.6 489,755 + +2.8 489,755 + SMa0876 0.81 -1.0 489,756 - SMa0876 0.81 -0.2 489,756 - SMa0876 0.81 +0.4 489,774 + SMa0876 0.83 -0.7 489,786 + SMa0876 0.84 -0.1 489,788 + SMa0876 0.84 -1.5 489,789 - SMa0876 0.84 -0.6 489,858 - +1.0 489,957 + -2.7 489,975 + +2.5 489,976 - -0.0 490,008 - -2.4 490,008 - -1.0 490,092 - -0.2 490,097 - -0.0 490,380 - SMa0878 0.20 +0.3 490,382 - SMa0878 0.20 -0.7 490,382 - SMa0878 0.20 +1.9 490,382 - SMa0878 0.20 -2.2
Or see this region's nucleotide sequence