Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0815 and SMa0816 are separated by 219 nucleotides SMa0816 and SMa0817 are separated by 12 nucleotides SMa0817 and SMa0819 are separated by 11 nucleotides
SMa0815: SMa0815 - Fis family transcriptional regulator, at 445,895 to 447,520
SMa0815
SMa0816: SMa0816 - FixX ferredoxin-like protein, at 447,740 to 448,036
SMa0816
SMa0817: SMa0817 - oxidoreductase FixC, at 448,049 to 449,356
SMa0817
SMa0819: SMa0819 - FixB electron transfer flavoprotein alpha chain, at 449,368 to 450,429
SMa0819
Position (kb) 448
449
450 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 447.076 kb on + strand, within SMa0815 at 447.090 kb on - strand, within SMa0815 at 447.109 kb on - strand, within SMa0815 at 447.109 kb on - strand, within SMa0815 at 447.421 kb on + strand at 447.422 kb on - strand at 447.479 kb on + strand at 447.480 kb on - strand at 447.536 kb on + strand at 447.551 kb on - strand at 447.551 kb on - strand at 447.584 kb on + strand at 447.584 kb on + strand at 447.607 kb on + strand at 447.611 kb on - strand at 447.658 kb on + strand at 447.731 kb on + strand at 447.731 kb on + strand at 447.732 kb on - strand at 447.732 kb on - strand at 447.781 kb on - strand, within SMa0816 at 447.926 kb on + strand, within SMa0816 at 447.955 kb on + strand, within SMa0816 at 447.956 kb on - strand, within SMa0816 at 447.956 kb on - strand, within SMa0816 at 448.151 kb on - strand at 448.151 kb on - strand at 448.193 kb on + strand, within SMa0817 at 448.207 kb on - strand, within SMa0817 at 448.234 kb on + strand, within SMa0817 at 448.235 kb on - strand, within SMa0817 at 448.429 kb on + strand, within SMa0817 at 448.430 kb on - strand, within SMa0817 at 448.430 kb on - strand, within SMa0817 at 448.430 kb on - strand, within SMa0817 at 448.430 kb on - strand, within SMa0817 at 448.521 kb on + strand, within SMa0817 at 448.530 kb on - strand, within SMa0817 at 448.574 kb on - strand, within SMa0817 at 448.593 kb on + strand, within SMa0817 at 448.593 kb on + strand, within SMa0817 at 448.668 kb on + strand, within SMa0817 at 448.668 kb on + strand, within SMa0817 at 448.833 kb on - strand, within SMa0817 at 448.964 kb on - strand, within SMa0817 at 449.016 kb on - strand, within SMa0817 at 449.110 kb on + strand, within SMa0817 at 449.111 kb on - strand, within SMa0817 at 449.205 kb on + strand, within SMa0817 at 449.206 kb on - strand, within SMa0817 at 449.206 kb on - strand, within SMa0817 at 449.206 kb on - strand, within SMa0817 at 449.210 kb on + strand, within SMa0817 at 449.211 kb on - strand, within SMa0817 at 449.211 kb on - strand, within SMa0817 at 449.212 kb on + strand, within SMa0817 at 449.212 kb on + strand, within SMa0817 at 449.213 kb on - strand, within SMa0817 at 449.213 kb on - strand, within SMa0817 at 449.242 kb on - strand at 449.293 kb on - strand at 449.314 kb on + strand at 449.315 kb on - strand at 449.508 kb on + strand, within SMa0819 at 449.508 kb on + strand, within SMa0819 at 449.509 kb on - strand, within SMa0819 at 449.509 kb on - strand, within SMa0819 at 449.509 kb on - strand, within SMa0819 at 449.575 kb on + strand, within SMa0819 at 449.579 kb on + strand, within SMa0819 at 449.579 kb on + strand, within SMa0819 at 449.777 kb on - strand, within SMa0819 at 449.777 kb on - strand, within SMa0819 at 449.874 kb on + strand, within SMa0819 at 449.899 kb on + strand, within SMa0819 at 449.900 kb on - strand, within SMa0819 at 449.946 kb on - strand, within SMa0819 at 449.946 kb on - strand, within SMa0819 at 449.946 kb on - strand, within SMa0819 at 450.016 kb on + strand, within SMa0819 at 450.016 kb on + strand, within SMa0819 at 450.017 kb on - strand, within SMa0819 at 450.017 kb on - strand, within SMa0819 at 450.090 kb on + strand, within SMa0819 at 450.091 kb on - strand, within SMa0819 at 450.201 kb on - strand, within SMa0819 at 450.237 kb on + strand, within SMa0819 at 450.238 kb on - strand, within SMa0819
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 447,076 + SMa0815 0.73 -0.8 447,090 - SMa0815 0.73 +1.8 447,109 - SMa0815 0.75 -0.7 447,109 - SMa0815 0.75 -0.5 447,421 + -0.2 447,422 - -0.2 447,479 + +0.6 447,480 - -1.7 447,536 + +0.0 447,551 - -1.5 447,551 - +0.8 447,584 + -0.5 447,584 + -0.9 447,607 + -2.7 447,611 - +0.2 447,658 + +2.8 447,731 + -1.8 447,731 + -0.1 447,732 - +0.0 447,732 - -2.2 447,781 - SMa0816 0.14 -0.7 447,926 + SMa0816 0.63 -0.2 447,955 + SMa0816 0.72 -1.1 447,956 - SMa0816 0.73 +0.1 447,956 - SMa0816 0.73 -2.2 448,151 - -1.0 448,151 - -0.5 448,193 + SMa0817 0.11 +2.8 448,207 - SMa0817 0.12 +1.4 448,234 + SMa0817 0.14 +1.2 448,235 - SMa0817 0.14 -0.1 448,429 + SMa0817 0.29 -0.2 448,430 - SMa0817 0.29 -0.4 448,430 - SMa0817 0.29 -0.1 448,430 - SMa0817 0.29 +3.5 448,430 - SMa0817 0.29 +0.3 448,521 + SMa0817 0.36 -0.8 448,530 - SMa0817 0.37 +0.4 448,574 - SMa0817 0.40 -1.9 448,593 + SMa0817 0.42 +0.2 448,593 + SMa0817 0.42 -1.1 448,668 + SMa0817 0.47 +0.9 448,668 + SMa0817 0.47 -0.5 448,833 - SMa0817 0.60 -2.0 448,964 - SMa0817 0.70 -1.6 449,016 - SMa0817 0.74 -0.4 449,110 + SMa0817 0.81 +0.4 449,111 - SMa0817 0.81 -0.4 449,205 + SMa0817 0.88 +0.1 449,206 - SMa0817 0.88 -0.1 449,206 - SMa0817 0.88 -1.6 449,206 - SMa0817 0.88 +0.0 449,210 + SMa0817 0.89 +0.2 449,211 - SMa0817 0.89 -0.0 449,211 - SMa0817 0.89 -0.4 449,212 + SMa0817 0.89 +1.5 449,212 + SMa0817 0.89 +1.6 449,213 - SMa0817 0.89 +0.5 449,213 - SMa0817 0.89 +0.1 449,242 - -0.2 449,293 - -2.7 449,314 + +0.3 449,315 - +0.2 449,508 + SMa0819 0.13 -0.2 449,508 + SMa0819 0.13 -0.2 449,509 - SMa0819 0.13 +2.8 449,509 - SMa0819 0.13 -1.9 449,509 - SMa0819 0.13 +0.5 449,575 + SMa0819 0.19 +3.2 449,579 + SMa0819 0.20 -1.3 449,579 + SMa0819 0.20 +0.3 449,777 - SMa0819 0.39 +2.2 449,777 - SMa0819 0.39 -0.1 449,874 + SMa0819 0.48 -2.0 449,899 + SMa0819 0.50 -0.3 449,900 - SMa0819 0.50 +0.3 449,946 - SMa0819 0.54 -1.1 449,946 - SMa0819 0.54 -1.2 449,946 - SMa0819 0.54 -0.1 450,016 + SMa0819 0.61 +0.1 450,016 + SMa0819 0.61 -1.8 450,017 - SMa0819 0.61 -0.4 450,017 - SMa0819 0.61 +0.8 450,090 + SMa0819 0.68 +2.8 450,091 - SMa0819 0.68 +1.6 450,201 - SMa0819 0.78 +0.2 450,237 + SMa0819 0.82 +0.1 450,238 - SMa0819 0.82 -0.9
Or see this region's nucleotide sequence