Strain Fitness in Sinorhizobium meliloti 1021 around SMa0101

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0097 and SMa0101 are separated by 182 nucleotidesSMa0101 and SMa0104 are separated by 56 nucleotides SMa0097: SMa0097 - LysR family transcriptional regulator, at 50,138 to 51,079 SMa0097 SMa0101: SMa0101 - amidohydrolase, at 51,262 to 52,887 SMa0101 SMa0104: SMa0104 - ABC transporter substrate-binding protein, at 52,944 to 54,536 SMa0104 Position (kb) 51 52 53Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 50.540 kb on + strand, within SMa0097at 50.540 kb on + strand, within SMa0097at 50.541 kb on - strand, within SMa0097at 50.541 kb on - strand, within SMa0097at 50.541 kb on - strand, within SMa0097at 50.583 kb on - strand, within SMa0097at 50.640 kb on + strand, within SMa0097at 50.640 kb on + strand, within SMa0097at 50.640 kb on + strand, within SMa0097at 50.640 kb on + strand, within SMa0097at 50.788 kb on + strand, within SMa0097at 50.789 kb on - strand, within SMa0097at 50.789 kb on - strand, within SMa0097at 50.853 kb on + strand, within SMa0097at 50.853 kb on + strand, within SMa0097at 50.854 kb on - strand, within SMa0097at 50.854 kb on - strand, within SMa0097at 51.119 kb on + strandat 51.142 kb on - strandat 51.221 kb on + strandat 51.221 kb on + strandat 51.221 kb on + strandat 51.222 kb on - strandat 51.222 kb on - strandat 51.222 kb on - strandat 51.222 kb on - strandat 51.222 kb on - strandat 51.288 kb on + strandat 51.288 kb on + strandat 51.289 kb on - strandat 51.289 kb on - strandat 51.693 kb on - strand, within SMa0101at 51.693 kb on - strand, within SMa0101at 51.718 kb on + strand, within SMa0101at 51.914 kb on - strand, within SMa0101at 51.992 kb on - strand, within SMa0101at 52.193 kb on - strand, within SMa0101at 52.193 kb on - strand, within SMa0101at 52.195 kb on - strand, within SMa0101at 52.336 kb on + strand, within SMa0101at 52.441 kb on - strand, within SMa0101at 52.489 kb on + strand, within SMa0101at 52.489 kb on + strand, within SMa0101at 52.489 kb on + strand, within SMa0101at 52.489 kb on + strand, within SMa0101at 52.489 kb on + strand, within SMa0101at 52.490 kb on - strand, within SMa0101at 52.490 kb on - strand, within SMa0101at 52.490 kb on - strand, within SMa0101at 52.490 kb on - strand, within SMa0101at 52.490 kb on - strand, within SMa0101at 52.490 kb on - strand, within SMa0101at 52.490 kb on - strand, within SMa0101at 52.493 kb on + strand, within SMa0101at 52.494 kb on - strand, within SMa0101at 52.494 kb on - strand, within SMa0101at 52.494 kb on - strand, within SMa0101at 52.702 kb on + strand, within SMa0101at 52.721 kb on - strand, within SMa0101at 53.049 kb on + strandat 53.136 kb on + strand, within SMa0104at 53.137 kb on - strand, within SMa0104at 53.137 kb on - strand, within SMa0104at 53.220 kb on + strand, within SMa0104at 53.220 kb on + strand, within SMa0104at 53.220 kb on + strand, within SMa0104at 53.221 kb on - strand, within SMa0104at 53.221 kb on - strand, within SMa0104at 53.283 kb on + strand, within SMa0104at 53.283 kb on + strand, within SMa0104at 53.284 kb on - strand, within SMa0104at 53.284 kb on - strand, within SMa0104at 53.289 kb on + strand, within SMa0104at 53.289 kb on + strand, within SMa0104at 53.290 kb on - strand, within SMa0104at 53.290 kb on - strand, within SMa0104at 53.364 kb on + strand, within SMa0104at 53.365 kb on - strand, within SMa0104at 53.365 kb on - strand, within SMa0104at 53.433 kb on + strand, within SMa0104at 53.433 kb on + strand, within SMa0104at 53.433 kb on + strand, within SMa0104at 53.434 kb on - strand, within SMa0104at 53.434 kb on - strand, within SMa0104at 53.488 kb on - strand, within SMa0104at 53.488 kb on - strand, within SMa0104at 53.604 kb on + strand, within SMa0104at 53.604 kb on + strand, within SMa0104at 53.604 kb on + strand, within SMa0104at 53.607 kb on + strand, within SMa0104at 53.727 kb on + strand, within SMa0104at 53.727 kb on + strand, within SMa0104at 53.728 kb on - strand, within SMa0104at 53.736 kb on + strand, within SMa0104at 53.737 kb on - strand, within SMa0104at 53.787 kb on + strand, within SMa0104at 53.788 kb on - strand, within SMa0104at 53.788 kb on - strand, within SMa0104at 53.788 kb on - strand, within SMa0104at 53.798 kb on + strand, within SMa0104

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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50,540 + SMa0097 0.43 -0.6
50,540 + SMa0097 0.43 +0.4
50,541 - SMa0097 0.43 +0.7
50,541 - SMa0097 0.43 -0.4
50,541 - SMa0097 0.43 -1.9
50,583 - SMa0097 0.47 -0.3
50,640 + SMa0097 0.53 -2.4
50,640 + SMa0097 0.53 +1.1
50,640 + SMa0097 0.53 -0.5
50,640 + SMa0097 0.53 -1.4
50,788 + SMa0097 0.69 +0.7
50,789 - SMa0097 0.69 +1.6
50,789 - SMa0097 0.69 -2.5
50,853 + SMa0097 0.76 -0.4
50,853 + SMa0097 0.76 -0.2
50,854 - SMa0097 0.76 -0.9
50,854 - SMa0097 0.76 +0.5
51,119 + -0.1
51,142 - +1.0
51,221 + +0.4
51,221 + +3.0
51,221 + +0.0
51,222 - +1.4
51,222 - -0.4
51,222 - -2.5
51,222 - -1.8
51,222 - +1.0
51,288 + +0.0
51,288 + +0.2
51,289 - -1.4
51,289 - -0.5
51,693 - SMa0101 0.27 +0.3
51,693 - SMa0101 0.27 +0.8
51,718 + SMa0101 0.28 +2.5
51,914 - SMa0101 0.40 +3.2
51,992 - SMa0101 0.45 -0.3
52,193 - SMa0101 0.57 -2.3
52,193 - SMa0101 0.57 -0.3
52,195 - SMa0101 0.57 -0.5
52,336 + SMa0101 0.66 +1.4
52,441 - SMa0101 0.73 -2.0
52,489 + SMa0101 0.75 -2.8
52,489 + SMa0101 0.75 +1.3
52,489 + SMa0101 0.75 +0.2
52,489 + SMa0101 0.75 -2.4
52,489 + SMa0101 0.75 +0.7
52,490 - SMa0101 0.76 -2.3
52,490 - SMa0101 0.76 -2.0
52,490 - SMa0101 0.76 +0.8
52,490 - SMa0101 0.76 +0.4
52,490 - SMa0101 0.76 -0.1
52,490 - SMa0101 0.76 -3.2
52,490 - SMa0101 0.76 +0.8
52,493 + SMa0101 0.76 -0.7
52,494 - SMa0101 0.76 -1.4
52,494 - SMa0101 0.76 -0.3
52,494 - SMa0101 0.76 -0.4
52,702 + SMa0101 0.89 +0.4
52,721 - SMa0101 0.90 -1.3
53,049 + -2.0
53,136 + SMa0104 0.12 -0.8
53,137 - SMa0104 0.12 -1.6
53,137 - SMa0104 0.12 -0.8
53,220 + SMa0104 0.17 -0.5
53,220 + SMa0104 0.17 -1.2
53,220 + SMa0104 0.17 -1.0
53,221 - SMa0104 0.17 -1.3
53,221 - SMa0104 0.17 -0.5
53,283 + SMa0104 0.21 +3.0
53,283 + SMa0104 0.21 +2.6
53,284 - SMa0104 0.21 +2.2
53,284 - SMa0104 0.21 +1.1
53,289 + SMa0104 0.22 +0.4
53,289 + SMa0104 0.22 -0.5
53,290 - SMa0104 0.22 -1.9
53,290 - SMa0104 0.22 +2.6
53,364 + SMa0104 0.26 +0.0
53,365 - SMa0104 0.26 +5.0
53,365 - SMa0104 0.26 -2.6
53,433 + SMa0104 0.31 +3.2
53,433 + SMa0104 0.31 -0.0
53,433 + SMa0104 0.31 -1.3
53,434 - SMa0104 0.31 -0.5
53,434 - SMa0104 0.31 -0.6
53,488 - SMa0104 0.34 +1.6
53,488 - SMa0104 0.34 +1.5
53,604 + SMa0104 0.41 +0.1
53,604 + SMa0104 0.41 +2.0
53,604 + SMa0104 0.41 -2.6
53,607 + SMa0104 0.42 +1.3
53,727 + SMa0104 0.49 -1.0
53,727 + SMa0104 0.49 -3.2
53,728 - SMa0104 0.49 -1.0
53,736 + SMa0104 0.50 -0.3
53,737 - SMa0104 0.50 -1.0
53,787 + SMa0104 0.53 -0.5
53,788 - SMa0104 0.53 +2.4
53,788 - SMa0104 0.53 -0.5
53,788 - SMa0104 0.53 -0.4
53,798 + SMa0104 0.54 -0.1

Or see this region's nucleotide sequence