Strain Fitness in Sinorhizobium meliloti 1021 around SM_b22015

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21407 and SM_b21408 are separated by 105 nucleotidesSM_b21408 and SM_b22015 are separated by 72 nucleotidesSM_b22015 and SM_b21410 are separated by 392 nucleotides SM_b21407: SM_b21407 - hypothetical protein, at 1,338,042 to 1,338,860 _b21407 SM_b21408: SM_b21408 - LysR family transcriptional regulator, at 1,338,966 to 1,339,325 _b21408 SM_b22015: SM_b22015 - LysR family transcriptional regulator, at 1,339,398 to 1,339,769 _b22015 SM_b21410: SM_b21410 - methyltransferase, S-adenosyl-L-methionine (SAM)-MTase, at 1,340,162 to 1,341,031 _b21410 Position (kb) 1339 1340Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1338.445 kb on + strand, within SM_b21407at 1338.445 kb on + strand, within SM_b21407at 1338.508 kb on + strand, within SM_b21407at 1338.508 kb on + strand, within SM_b21407at 1338.508 kb on + strand, within SM_b21407at 1338.508 kb on + strand, within SM_b21407at 1338.508 kb on + strand, within SM_b21407at 1338.536 kb on - strand, within SM_b21407at 1338.579 kb on + strand, within SM_b21407at 1338.579 kb on + strand, within SM_b21407at 1338.579 kb on + strand, within SM_b21407at 1338.579 kb on + strand, within SM_b21407at 1338.580 kb on - strand, within SM_b21407at 1338.580 kb on - strand, within SM_b21407at 1338.580 kb on - strand, within SM_b21407at 1338.713 kb on + strand, within SM_b21407at 1338.714 kb on - strand, within SM_b21407at 1338.746 kb on - strand, within SM_b21407at 1338.746 kb on - strand, within SM_b21407at 1338.858 kb on + strandat 1338.858 kb on + strandat 1338.880 kb on + strandat 1338.880 kb on + strandat 1338.881 kb on - strandat 1338.881 kb on - strandat 1338.921 kb on + strandat 1338.921 kb on + strandat 1338.922 kb on - strandat 1338.936 kb on + strandat 1338.936 kb on + strandat 1338.936 kb on + strandat 1338.995 kb on - strandat 1339.044 kb on - strand, within SM_b21408at 1339.101 kb on + strand, within SM_b21408at 1339.216 kb on + strand, within SM_b21408at 1339.217 kb on - strand, within SM_b21408at 1339.582 kb on + strand, within SM_b22015at 1339.582 kb on + strand, within SM_b22015at 1339.583 kb on - strand, within SM_b22015at 1339.583 kb on - strand, within SM_b22015at 1339.583 kb on - strand, within SM_b22015at 1339.583 kb on - strand, within SM_b22015at 1339.768 kb on - strandat 1339.768 kb on - strandat 1339.770 kb on + strandat 1340.083 kb on - strandat 1340.097 kb on + strandat 1340.128 kb on + strandat 1340.128 kb on + strandat 1340.128 kb on + strandat 1340.132 kb on + strandat 1340.133 kb on - strandat 1340.148 kb on + strandat 1340.148 kb on + strandat 1340.200 kb on + strandat 1340.201 kb on - strandat 1340.201 kb on - strandat 1340.206 kb on - strandat 1340.278 kb on + strand, within SM_b21410at 1340.278 kb on + strand, within SM_b21410at 1340.278 kb on + strand, within SM_b21410at 1340.278 kb on + strand, within SM_b21410at 1340.279 kb on - strand, within SM_b21410at 1340.432 kb on + strand, within SM_b21410at 1340.433 kb on - strand, within SM_b21410at 1340.433 kb on - strand, within SM_b21410at 1340.485 kb on - strand, within SM_b21410at 1340.735 kb on + strand, within SM_b21410at 1340.735 kb on + strand, within SM_b21410at 1340.736 kb on - strand, within SM_b21410

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,338,445 + SM_b21407 0.49 -2.0
1,338,445 + SM_b21407 0.49 +0.2
1,338,508 + SM_b21407 0.57 -1.0
1,338,508 + SM_b21407 0.57 +0.5
1,338,508 + SM_b21407 0.57 +1.9
1,338,508 + SM_b21407 0.57 +0.2
1,338,508 + SM_b21407 0.57 +1.4
1,338,536 - SM_b21407 0.60 +0.6
1,338,579 + SM_b21407 0.66 -0.2
1,338,579 + SM_b21407 0.66 -1.1
1,338,579 + SM_b21407 0.66 -0.2
1,338,579 + SM_b21407 0.66 +0.0
1,338,580 - SM_b21407 0.66 -0.4
1,338,580 - SM_b21407 0.66 +1.6
1,338,580 - SM_b21407 0.66 -0.1
1,338,713 + SM_b21407 0.82 -2.9
1,338,714 - SM_b21407 0.82 -1.3
1,338,746 - SM_b21407 0.86 +2.0
1,338,746 - SM_b21407 0.86 -1.6
1,338,858 + +1.0
1,338,858 + -1.2
1,338,880 + -2.1
1,338,880 + +0.1
1,338,881 - -0.2
1,338,881 - -0.9
1,338,921 + -1.2
1,338,921 + +0.1
1,338,922 - +0.9
1,338,936 + +0.2
1,338,936 + +0.8
1,338,936 + +2.0
1,338,995 - +1.0
1,339,044 - SM_b21408 0.22 -0.9
1,339,101 + SM_b21408 0.38 -0.7
1,339,216 + SM_b21408 0.69 +1.5
1,339,217 - SM_b21408 0.70 -3.4
1,339,582 + SM_b22015 0.49 -2.8
1,339,582 + SM_b22015 0.49 +1.5
1,339,583 - SM_b22015 0.50 -0.3
1,339,583 - SM_b22015 0.50 -0.1
1,339,583 - SM_b22015 0.50 +0.9
1,339,583 - SM_b22015 0.50 +1.4
1,339,768 - +0.1
1,339,768 - +0.4
1,339,770 + +1.6
1,340,083 - -0.5
1,340,097 + -0.7
1,340,128 + -0.3
1,340,128 + -0.6
1,340,128 + -0.5
1,340,132 + -2.0
1,340,133 - -0.9
1,340,148 + +2.6
1,340,148 + +1.2
1,340,200 + +1.3
1,340,201 - -0.2
1,340,201 - -0.5
1,340,206 - +2.3
1,340,278 + SM_b21410 0.13 +0.1
1,340,278 + SM_b21410 0.13 -0.0
1,340,278 + SM_b21410 0.13 -0.5
1,340,278 + SM_b21410 0.13 -0.9
1,340,279 - SM_b21410 0.13 -0.0
1,340,432 + SM_b21410 0.31 -1.3
1,340,433 - SM_b21410 0.31 +0.5
1,340,433 - SM_b21410 0.31 -0.2
1,340,485 - SM_b21410 0.37 -1.2
1,340,735 + SM_b21410 0.66 +0.6
1,340,735 + SM_b21410 0.66 +2.0
1,340,736 - SM_b21410 0.66 -0.6

Or see this region's nucleotide sequence