Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21407 and SM_b21408 are separated by 105 nucleotides SM_b21408 and SM_b22015 are separated by 72 nucleotides SM_b22015 and SM_b21410 are separated by 392 nucleotides
SM_b21407: SM_b21407 - hypothetical protein, at 1,338,042 to 1,338,860
_b21407
SM_b21408: SM_b21408 - LysR family transcriptional regulator, at 1,338,966 to 1,339,325
_b21408
SM_b22015: SM_b22015 - LysR family transcriptional regulator, at 1,339,398 to 1,339,769
_b22015
SM_b21410: SM_b21410 - methyltransferase, S-adenosyl-L-methionine (SAM)-MTase, at 1,340,162 to 1,341,031
_b21410
Position (kb)
1339
1340 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1338.445 kb on + strand, within SM_b21407 at 1338.445 kb on + strand, within SM_b21407 at 1338.508 kb on + strand, within SM_b21407 at 1338.508 kb on + strand, within SM_b21407 at 1338.508 kb on + strand, within SM_b21407 at 1338.508 kb on + strand, within SM_b21407 at 1338.508 kb on + strand, within SM_b21407 at 1338.536 kb on - strand, within SM_b21407 at 1338.579 kb on + strand, within SM_b21407 at 1338.579 kb on + strand, within SM_b21407 at 1338.579 kb on + strand, within SM_b21407 at 1338.579 kb on + strand, within SM_b21407 at 1338.580 kb on - strand, within SM_b21407 at 1338.580 kb on - strand, within SM_b21407 at 1338.580 kb on - strand, within SM_b21407 at 1338.713 kb on + strand, within SM_b21407 at 1338.714 kb on - strand, within SM_b21407 at 1338.746 kb on - strand, within SM_b21407 at 1338.746 kb on - strand, within SM_b21407 at 1338.858 kb on + strand at 1338.858 kb on + strand at 1338.880 kb on + strand at 1338.880 kb on + strand at 1338.881 kb on - strand at 1338.881 kb on - strand at 1338.921 kb on + strand at 1338.921 kb on + strand at 1338.922 kb on - strand at 1338.936 kb on + strand at 1338.936 kb on + strand at 1338.936 kb on + strand at 1338.995 kb on - strand at 1339.044 kb on - strand, within SM_b21408 at 1339.101 kb on + strand, within SM_b21408 at 1339.216 kb on + strand, within SM_b21408 at 1339.217 kb on - strand, within SM_b21408 at 1339.582 kb on + strand, within SM_b22015 at 1339.582 kb on + strand, within SM_b22015 at 1339.583 kb on - strand, within SM_b22015 at 1339.583 kb on - strand, within SM_b22015 at 1339.583 kb on - strand, within SM_b22015 at 1339.583 kb on - strand, within SM_b22015 at 1339.768 kb on - strand at 1339.768 kb on - strand at 1339.770 kb on + strand at 1340.083 kb on - strand at 1340.097 kb on + strand at 1340.128 kb on + strand at 1340.128 kb on + strand at 1340.128 kb on + strand at 1340.132 kb on + strand at 1340.133 kb on - strand at 1340.148 kb on + strand at 1340.148 kb on + strand at 1340.200 kb on + strand at 1340.201 kb on - strand at 1340.201 kb on - strand at 1340.206 kb on - strand at 1340.278 kb on + strand, within SM_b21410 at 1340.278 kb on + strand, within SM_b21410 at 1340.278 kb on + strand, within SM_b21410 at 1340.278 kb on + strand, within SM_b21410 at 1340.279 kb on - strand, within SM_b21410 at 1340.432 kb on + strand, within SM_b21410 at 1340.433 kb on - strand, within SM_b21410 at 1340.433 kb on - strand, within SM_b21410 at 1340.485 kb on - strand, within SM_b21410 at 1340.735 kb on + strand, within SM_b21410 at 1340.735 kb on + strand, within SM_b21410 at 1340.736 kb on - strand, within SM_b21410
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,338,445 + SM_b21407 0.49 -2.0 1,338,445 + SM_b21407 0.49 +0.2 1,338,508 + SM_b21407 0.57 -1.0 1,338,508 + SM_b21407 0.57 +0.5 1,338,508 + SM_b21407 0.57 +1.9 1,338,508 + SM_b21407 0.57 +0.2 1,338,508 + SM_b21407 0.57 +1.4 1,338,536 - SM_b21407 0.60 +0.6 1,338,579 + SM_b21407 0.66 -0.2 1,338,579 + SM_b21407 0.66 -1.1 1,338,579 + SM_b21407 0.66 -0.2 1,338,579 + SM_b21407 0.66 +0.0 1,338,580 - SM_b21407 0.66 -0.4 1,338,580 - SM_b21407 0.66 +1.6 1,338,580 - SM_b21407 0.66 -0.1 1,338,713 + SM_b21407 0.82 -2.9 1,338,714 - SM_b21407 0.82 -1.3 1,338,746 - SM_b21407 0.86 +2.0 1,338,746 - SM_b21407 0.86 -1.6 1,338,858 + +1.0 1,338,858 + -1.2 1,338,880 + -2.1 1,338,880 + +0.1 1,338,881 - -0.2 1,338,881 - -0.9 1,338,921 + -1.2 1,338,921 + +0.1 1,338,922 - +0.9 1,338,936 + +0.2 1,338,936 + +0.8 1,338,936 + +2.0 1,338,995 - +1.0 1,339,044 - SM_b21408 0.22 -0.9 1,339,101 + SM_b21408 0.38 -0.7 1,339,216 + SM_b21408 0.69 +1.5 1,339,217 - SM_b21408 0.70 -3.4 1,339,582 + SM_b22015 0.49 -2.8 1,339,582 + SM_b22015 0.49 +1.5 1,339,583 - SM_b22015 0.50 -0.3 1,339,583 - SM_b22015 0.50 -0.1 1,339,583 - SM_b22015 0.50 +0.9 1,339,583 - SM_b22015 0.50 +1.4 1,339,768 - +0.1 1,339,768 - +0.4 1,339,770 + +1.6 1,340,083 - -0.5 1,340,097 + -0.7 1,340,128 + -0.3 1,340,128 + -0.6 1,340,128 + -0.5 1,340,132 + -2.0 1,340,133 - -0.9 1,340,148 + +2.6 1,340,148 + +1.2 1,340,200 + +1.3 1,340,201 - -0.2 1,340,201 - -0.5 1,340,206 - +2.3 1,340,278 + SM_b21410 0.13 +0.1 1,340,278 + SM_b21410 0.13 -0.0 1,340,278 + SM_b21410 0.13 -0.5 1,340,278 + SM_b21410 0.13 -0.9 1,340,279 - SM_b21410 0.13 -0.0 1,340,432 + SM_b21410 0.31 -1.3 1,340,433 - SM_b21410 0.31 +0.5 1,340,433 - SM_b21410 0.31 -0.2 1,340,485 - SM_b21410 0.37 -1.2 1,340,735 + SM_b21410 0.66 +0.6 1,340,735 + SM_b21410 0.66 +2.0 1,340,736 - SM_b21410 0.66 -0.6
Or see this region's nucleotide sequence