Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21636

Experiment: L-Arginine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSM_b21635 and SM_b21636 are separated by 50 nucleotidesSM_b21636 and SM_b21637 are separated by 28 nucleotidesSM_b21637 and SM_b21638 are separated by 9 nucleotides SM_b21635: SM_b21635 - bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase, at 1,662,986 to 1,665,052 _b21635 SM_b21636: SM_b21636 - ferredoxin reductase electron transfer protein, at 1,665,103 to 1,666,179 _b21636 SM_b21637: SM_b21637 - phenylacetic acid degradation protein, at 1,666,208 to 1,666,732 _b21637 SM_b21638: SM_b21638 - phenylacetic acid degradation protein, at 1,666,742 to 1,667,527 _b21638 Position (kb) 1665 1666 1667Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1664.288 kb on - strand, within SM_b21635at 1664.605 kb on + strand, within SM_b21635at 1664.606 kb on - strand, within SM_b21635at 1664.703 kb on + strand, within SM_b21635at 1664.784 kb on + strand, within SM_b21635at 1664.892 kb on + strandat 1664.892 kb on + strandat 1664.893 kb on - strandat 1664.893 kb on - strandat 1665.010 kb on + strandat 1665.012 kb on + strandat 1665.114 kb on - strandat 1665.165 kb on - strandat 1665.165 kb on - strandat 1665.182 kb on + strandat 1665.182 kb on + strandat 1665.183 kb on - strandat 1665.741 kb on - strand, within SM_b21636at 1665.741 kb on - strand, within SM_b21636at 1665.787 kb on + strand, within SM_b21636at 1666.011 kb on - strand, within SM_b21636at 1666.059 kb on - strand, within SM_b21636at 1666.166 kb on + strandat 1666.204 kb on + strandat 1666.204 kb on + strandat 1666.205 kb on - strandat 1666.225 kb on - strandat 1666.257 kb on + strandat 1666.257 kb on + strandat 1666.257 kb on + strandat 1666.258 kb on - strandat 1666.697 kb on + strandat 1666.697 kb on + strandat 1666.697 kb on + strandat 1666.697 kb on + strandat 1666.697 kb on + strandat 1666.697 kb on + strandat 1666.698 kb on - strandat 1666.698 kb on - strandat 1666.719 kb on - strandat 1666.733 kb on - strandat 1666.743 kb on + strandat 1666.743 kb on + strandat 1666.744 kb on - strandat 1666.797 kb on + strandat 1666.798 kb on - strandat 1666.798 kb on - strandat 1666.843 kb on + strand, within SM_b21638at 1666.843 kb on + strand, within SM_b21638at 1666.844 kb on - strand, within SM_b21638at 1666.845 kb on + strand, within SM_b21638at 1666.994 kb on - strand, within SM_b21638at 1666.995 kb on + strand, within SM_b21638at 1666.996 kb on - strand, within SM_b21638at 1666.996 kb on - strand, within SM_b21638at 1666.996 kb on - strand, within SM_b21638at 1667.006 kb on - strand, within SM_b21638at 1667.026 kb on + strand, within SM_b21638at 1667.027 kb on - strand, within SM_b21638at 1667.094 kb on + strand, within SM_b21638at 1667.094 kb on + strand, within SM_b21638at 1667.094 kb on + strand, within SM_b21638at 1667.095 kb on - strand, within SM_b21638at 1667.095 kb on - strand, within SM_b21638at 1667.175 kb on + strand, within SM_b21638at 1667.175 kb on + strand, within SM_b21638at 1667.175 kb on + strand, within SM_b21638at 1667.176 kb on - strand, within SM_b21638at 1667.176 kb on - strand, within SM_b21638

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
remove
1,664,288 - SM_b21635 0.63 -0.1
1,664,605 + SM_b21635 0.78 -0.1
1,664,606 - SM_b21635 0.78 -0.1
1,664,703 + SM_b21635 0.83 -0.8
1,664,784 + SM_b21635 0.87 +0.1
1,664,892 + -2.0
1,664,892 + -1.6
1,664,893 - +0.4
1,664,893 - +0.4
1,665,010 + -0.7
1,665,012 + +2.0
1,665,114 - -0.1
1,665,165 - -2.5
1,665,165 - +3.2
1,665,182 + -1.3
1,665,182 + -0.4
1,665,183 - -0.8
1,665,741 - SM_b21636 0.59 -0.4
1,665,741 - SM_b21636 0.59 +0.2
1,665,787 + SM_b21636 0.64 +0.2
1,666,011 - SM_b21636 0.84 +0.8
1,666,059 - SM_b21636 0.89 +0.2
1,666,166 + -0.1
1,666,204 + -0.6
1,666,204 + +0.3
1,666,205 - +0.5
1,666,225 - +0.7
1,666,257 + +3.8
1,666,257 + -1.3
1,666,257 + +0.5
1,666,258 - -1.5
1,666,697 + +0.5
1,666,697 + +0.8
1,666,697 + +0.2
1,666,697 + +0.3
1,666,697 + -0.0
1,666,697 + +1.0
1,666,698 - +0.4
1,666,698 - -0.8
1,666,719 - +0.9
1,666,733 - -0.5
1,666,743 + +0.5
1,666,743 + -0.0
1,666,744 - -2.7
1,666,797 + +0.9
1,666,798 - +0.4
1,666,798 - -0.7
1,666,843 + SM_b21638 0.13 -0.9
1,666,843 + SM_b21638 0.13 -0.3
1,666,844 - SM_b21638 0.13 +0.9
1,666,845 + SM_b21638 0.13 +0.4
1,666,994 - SM_b21638 0.32 -0.7
1,666,995 + SM_b21638 0.32 +0.0
1,666,996 - SM_b21638 0.32 -3.6
1,666,996 - SM_b21638 0.32 -0.9
1,666,996 - SM_b21638 0.32 -0.4
1,667,006 - SM_b21638 0.34 -0.4
1,667,026 + SM_b21638 0.36 -0.7
1,667,027 - SM_b21638 0.36 -2.5
1,667,094 + SM_b21638 0.45 +1.4
1,667,094 + SM_b21638 0.45 -1.5
1,667,094 + SM_b21638 0.45 +0.8
1,667,095 - SM_b21638 0.45 -0.6
1,667,095 - SM_b21638 0.45 +0.2
1,667,175 + SM_b21638 0.55 -1.8
1,667,175 + SM_b21638 0.55 -0.2
1,667,175 + SM_b21638 0.55 -0.2
1,667,176 - SM_b21638 0.55 +0.3
1,667,176 - SM_b21638 0.55 -1.4

Or see this region's nucleotide sequence