Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21503 and SM_b21504 are separated by 10 nucleotides SM_b21504 and SM_b21505 overlap by 8 nucleotides
SM_b21503: SM_b21503 - glycosyltransferase, at 1,427,874 to 1,429,217
_b21503
SM_b21504: SM_b21504 - hypothetical protein, at 1,429,228 to 1,429,983
_b21504
SM_b21505: SM_b21505 - membrane protein, Wzy-like polysaccharide polymerase ExoQ, at 1,429,976 to 1,431,307
_b21505
Position (kb)
1429
1430 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1428.278 kb on - strand, within SM_b21503 at 1428.511 kb on + strand, within SM_b21503 at 1428.616 kb on + strand, within SM_b21503 at 1428.752 kb on - strand, within SM_b21503 at 1428.781 kb on - strand, within SM_b21503 at 1428.901 kb on + strand, within SM_b21503 at 1428.901 kb on + strand, within SM_b21503 at 1429.034 kb on - strand, within SM_b21503 at 1429.034 kb on - strand, within SM_b21503 at 1429.139 kb on + strand at 1429.139 kb on + strand at 1429.139 kb on + strand at 1429.140 kb on - strand at 1429.183 kb on + strand at 1429.183 kb on + strand at 1429.183 kb on + strand at 1429.184 kb on - strand at 1429.229 kb on + strand at 1429.292 kb on + strand at 1429.293 kb on - strand at 1429.331 kb on + strand, within SM_b21504 at 1429.332 kb on - strand, within SM_b21504 at 1429.332 kb on - strand, within SM_b21504 at 1429.566 kb on - strand, within SM_b21504 at 1429.784 kb on - strand, within SM_b21504 at 1429.784 kb on - strand, within SM_b21504 at 1429.784 kb on - strand, within SM_b21504 at 1429.785 kb on + strand, within SM_b21504 at 1429.787 kb on + strand, within SM_b21504 at 1429.787 kb on + strand, within SM_b21504 at 1429.787 kb on + strand, within SM_b21504 at 1429.787 kb on + strand, within SM_b21504 at 1429.787 kb on + strand, within SM_b21504 at 1429.788 kb on - strand, within SM_b21504 at 1429.788 kb on - strand, within SM_b21504 at 1429.788 kb on - strand, within SM_b21504 at 1429.788 kb on - strand, within SM_b21504 at 1429.788 kb on - strand, within SM_b21504 at 1429.788 kb on - strand, within SM_b21504 at 1429.808 kb on + strand, within SM_b21504 at 1429.808 kb on + strand, within SM_b21504 at 1429.809 kb on - strand, within SM_b21504 at 1429.809 kb on - strand, within SM_b21504 at 1429.809 kb on - strand, within SM_b21504 at 1429.988 kb on + strand at 1430.055 kb on + strand at 1430.056 kb on - strand at 1430.056 kb on - strand at 1430.137 kb on - strand, within SM_b21505 at 1430.145 kb on - strand, within SM_b21505 at 1430.150 kb on + strand, within SM_b21505 at 1430.151 kb on - strand, within SM_b21505 at 1430.341 kb on - strand, within SM_b21505 at 1430.380 kb on - strand, within SM_b21505 at 1430.380 kb on - strand, within SM_b21505 at 1430.706 kb on + strand, within SM_b21505 at 1430.707 kb on - strand, within SM_b21505 at 1430.707 kb on - strand, within SM_b21505 at 1430.850 kb on + strand, within SM_b21505 at 1430.851 kb on - strand, within SM_b21505 at 1430.853 kb on + strand, within SM_b21505 at 1430.854 kb on - strand, within SM_b21505 at 1430.931 kb on + strand, within SM_b21505 at 1430.932 kb on - strand, within SM_b21505 at 1430.932 kb on - strand, within SM_b21505
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,428,278 - SM_b21503 0.30 -0.8 1,428,511 + SM_b21503 0.47 +0.2 1,428,616 + SM_b21503 0.55 +2.1 1,428,752 - SM_b21503 0.65 -0.9 1,428,781 - SM_b21503 0.67 -1.1 1,428,901 + SM_b21503 0.76 +0.8 1,428,901 + SM_b21503 0.76 +0.5 1,429,034 - SM_b21503 0.86 +1.1 1,429,034 - SM_b21503 0.86 -0.3 1,429,139 + +1.0 1,429,139 + +0.9 1,429,139 + -1.1 1,429,140 - +0.9 1,429,183 + -2.0 1,429,183 + +0.7 1,429,183 + -1.0 1,429,184 - -0.7 1,429,229 + -2.2 1,429,292 + +1.0 1,429,293 - -1.1 1,429,331 + SM_b21504 0.14 -1.2 1,429,332 - SM_b21504 0.14 -1.8 1,429,332 - SM_b21504 0.14 -1.0 1,429,566 - SM_b21504 0.45 +1.3 1,429,784 - SM_b21504 0.74 +0.6 1,429,784 - SM_b21504 0.74 -0.1 1,429,784 - SM_b21504 0.74 -1.8 1,429,785 + SM_b21504 0.74 -0.1 1,429,787 + SM_b21504 0.74 -2.0 1,429,787 + SM_b21504 0.74 +0.3 1,429,787 + SM_b21504 0.74 +0.1 1,429,787 + SM_b21504 0.74 -0.4 1,429,787 + SM_b21504 0.74 -1.4 1,429,788 - SM_b21504 0.74 -1.1 1,429,788 - SM_b21504 0.74 +1.3 1,429,788 - SM_b21504 0.74 -0.6 1,429,788 - SM_b21504 0.74 +0.3 1,429,788 - SM_b21504 0.74 -2.5 1,429,788 - SM_b21504 0.74 -0.4 1,429,808 + SM_b21504 0.77 +0.6 1,429,808 + SM_b21504 0.77 -0.8 1,429,809 - SM_b21504 0.77 -1.2 1,429,809 - SM_b21504 0.77 -1.5 1,429,809 - SM_b21504 0.77 -0.4 1,429,988 + +0.6 1,430,055 + -1.3 1,430,056 - -1.3 1,430,056 - +0.7 1,430,137 - SM_b21505 0.12 +2.5 1,430,145 - SM_b21505 0.13 -1.7 1,430,150 + SM_b21505 0.13 -0.6 1,430,151 - SM_b21505 0.13 -0.7 1,430,341 - SM_b21505 0.27 -0.2 1,430,380 - SM_b21505 0.30 -0.5 1,430,380 - SM_b21505 0.30 +0.3 1,430,706 + SM_b21505 0.55 -1.0 1,430,707 - SM_b21505 0.55 +0.3 1,430,707 - SM_b21505 0.55 -0.3 1,430,850 + SM_b21505 0.66 -0.5 1,430,851 - SM_b21505 0.66 -0.9 1,430,853 + SM_b21505 0.66 -0.9 1,430,854 - SM_b21505 0.66 +0.3 1,430,931 + SM_b21505 0.72 +1.0 1,430,932 - SM_b21505 0.72 -0.6 1,430,932 - SM_b21505 0.72 -2.9
Or see this region's nucleotide sequence