Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21403 and SM_b21404 are separated by 81 nucleotides SM_b21404 and SM_b21405 overlap by 13 nucleotides
SM_b21403: SM_b21403 - hypothetical protein, at 1,335,358 to 1,335,813
_b21403
SM_b21404: SM_b21404 - hypothetical protein, at 1,335,895 to 1,336,335
_b21404
SM_b21405: SM_b21405 - isochorismatase, at 1,336,323 to 1,336,976
_b21405
Position (kb)
1335
1336 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1334.472 kb on + strand at 1334.472 kb on + strand at 1334.657 kb on - strand at 1334.665 kb on - strand at 1334.816 kb on + strand at 1334.817 kb on - strand at 1334.880 kb on + strand at 1334.880 kb on + strand at 1334.880 kb on + strand at 1334.880 kb on + strand at 1334.880 kb on + strand at 1334.881 kb on - strand at 1334.881 kb on - strand at 1334.964 kb on + strand at 1335.156 kb on + strand at 1335.180 kb on + strand at 1335.180 kb on + strand at 1335.180 kb on + strand at 1335.180 kb on + strand at 1335.180 kb on + strand at 1335.181 kb on - strand at 1335.181 kb on - strand at 1335.308 kb on + strand at 1335.308 kb on + strand at 1335.309 kb on - strand at 1335.317 kb on + strand at 1335.427 kb on + strand, within SM_b21403 at 1335.427 kb on + strand, within SM_b21403 at 1335.427 kb on + strand, within SM_b21403 at 1335.491 kb on + strand, within SM_b21403 at 1335.492 kb on - strand, within SM_b21403 at 1335.492 kb on - strand, within SM_b21403 at 1335.503 kb on + strand, within SM_b21403 at 1335.504 kb on - strand, within SM_b21403 at 1335.504 kb on - strand, within SM_b21403 at 1335.539 kb on + strand, within SM_b21403 at 1335.540 kb on - strand, within SM_b21403 at 1335.540 kb on - strand, within SM_b21403 at 1335.540 kb on - strand, within SM_b21403 at 1335.627 kb on + strand, within SM_b21403 at 1335.765 kb on + strand, within SM_b21403 at 1335.765 kb on + strand, within SM_b21403 at 1335.765 kb on + strand, within SM_b21403 at 1335.766 kb on - strand, within SM_b21403 at 1335.766 kb on - strand, within SM_b21403 at 1335.766 kb on - strand, within SM_b21403 at 1335.766 kb on - strand, within SM_b21403 at 1335.766 kb on - strand, within SM_b21403 at 1335.831 kb on + strand at 1335.831 kb on + strand at 1335.834 kb on - strand at 1335.854 kb on + strand at 1335.862 kb on + strand at 1335.866 kb on - strand at 1335.873 kb on + strand at 1335.874 kb on - strand at 1335.874 kb on - strand at 1335.874 kb on - strand at 1335.878 kb on + strand at 1336.035 kb on + strand, within SM_b21404 at 1336.035 kb on + strand, within SM_b21404 at 1336.143 kb on + strand, within SM_b21404 at 1336.143 kb on + strand, within SM_b21404 at 1336.143 kb on + strand, within SM_b21404 at 1336.144 kb on - strand, within SM_b21404 at 1336.167 kb on - strand, within SM_b21404 at 1336.176 kb on + strand, within SM_b21404 at 1336.177 kb on - strand, within SM_b21404 at 1336.177 kb on - strand, within SM_b21404 at 1336.205 kb on + strand, within SM_b21404 at 1336.206 kb on - strand, within SM_b21404 at 1336.206 kb on - strand, within SM_b21404 at 1336.206 kb on - strand, within SM_b21404 at 1336.367 kb on + strand at 1336.431 kb on + strand, within SM_b21405 at 1336.432 kb on - strand, within SM_b21405 at 1336.708 kb on + strand, within SM_b21405 at 1336.709 kb on - strand, within SM_b21405 at 1336.709 kb on - strand, within SM_b21405
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,334,472 + -1.7 1,334,472 + -0.0 1,334,657 - -1.2 1,334,665 - +0.0 1,334,816 + +2.0 1,334,817 - -0.7 1,334,880 + -0.5 1,334,880 + +0.0 1,334,880 + +1.6 1,334,880 + -1.2 1,334,880 + -1.1 1,334,881 - -1.5 1,334,881 - +1.1 1,334,964 + -0.0 1,335,156 + +0.9 1,335,180 + +0.1 1,335,180 + +1.4 1,335,180 + +1.2 1,335,180 + +0.9 1,335,180 + -0.3 1,335,181 - +0.6 1,335,181 - +1.4 1,335,308 + +0.9 1,335,308 + +0.1 1,335,309 - +1.6 1,335,317 + -1.9 1,335,427 + SM_b21403 0.15 -2.3 1,335,427 + SM_b21403 0.15 +0.3 1,335,427 + SM_b21403 0.15 -0.2 1,335,491 + SM_b21403 0.29 -0.0 1,335,492 - SM_b21403 0.29 -0.1 1,335,492 - SM_b21403 0.29 +2.1 1,335,503 + SM_b21403 0.32 +0.4 1,335,504 - SM_b21403 0.32 -0.3 1,335,504 - SM_b21403 0.32 -2.8 1,335,539 + SM_b21403 0.40 -2.6 1,335,540 - SM_b21403 0.40 +2.0 1,335,540 - SM_b21403 0.40 -1.8 1,335,540 - SM_b21403 0.40 +0.8 1,335,627 + SM_b21403 0.59 +0.1 1,335,765 + SM_b21403 0.89 -1.5 1,335,765 + SM_b21403 0.89 -0.3 1,335,765 + SM_b21403 0.89 +1.0 1,335,766 - SM_b21403 0.89 -2.9 1,335,766 - SM_b21403 0.89 -0.9 1,335,766 - SM_b21403 0.89 +1.0 1,335,766 - SM_b21403 0.89 -0.0 1,335,766 - SM_b21403 0.89 -0.6 1,335,831 + -2.2 1,335,831 + +0.4 1,335,834 - -0.5 1,335,854 + -1.2 1,335,862 + -1.5 1,335,866 - +1.4 1,335,873 + -1.6 1,335,874 - +0.6 1,335,874 - -1.2 1,335,874 - -0.5 1,335,878 + -2.9 1,336,035 + SM_b21404 0.32 +0.0 1,336,035 + SM_b21404 0.32 -0.3 1,336,143 + SM_b21404 0.56 +0.0 1,336,143 + SM_b21404 0.56 -1.2 1,336,143 + SM_b21404 0.56 -0.3 1,336,144 - SM_b21404 0.56 +2.3 1,336,167 - SM_b21404 0.62 -1.3 1,336,176 + SM_b21404 0.64 +1.9 1,336,177 - SM_b21404 0.64 -3.7 1,336,177 - SM_b21404 0.64 +0.3 1,336,205 + SM_b21404 0.70 -0.6 1,336,206 - SM_b21404 0.71 -0.2 1,336,206 - SM_b21404 0.71 -0.5 1,336,206 - SM_b21404 0.71 +1.0 1,336,367 + -0.3 1,336,431 + SM_b21405 0.17 -0.0 1,336,432 - SM_b21405 0.17 -0.7 1,336,708 + SM_b21405 0.59 -0.5 1,336,709 - SM_b21405 0.59 +0.3 1,336,709 - SM_b21405 0.59 -3.0
Or see this region's nucleotide sequence