Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21053

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21052 and SM_b21053 are separated by 19 nucleotidesSM_b21053 and SM_b21054 are separated by 88 nucleotidesSM_b21054 and SM_b21055 are separated by 232 nucleotides SM_b21052: SM_b21052 - epimerase dehydratase, at 685,581 to 686,546 _b21052 SM_b21053: SM_b21053 - membrane-anchored glycosyltransferase, at 686,566 to 687,816 _b21053 SM_b21054: SM_b21054 - hypothetical protein, at 687,905 to 688,522 _b21054 SM_b21055: SM_b21055 - hypothetical protein, at 688,755 to 689,339 _b21055 Position (kb) 686 687 688Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 685.572 kb on - strandat 685.709 kb on + strand, within SM_b21052at 685.710 kb on - strand, within SM_b21052at 685.745 kb on - strand, within SM_b21052at 685.788 kb on + strand, within SM_b21052at 685.789 kb on - strand, within SM_b21052at 685.878 kb on - strand, within SM_b21052at 685.935 kb on + strand, within SM_b21052at 686.022 kb on + strand, within SM_b21052at 686.023 kb on - strand, within SM_b21052at 686.053 kb on - strand, within SM_b21052at 686.056 kb on + strand, within SM_b21052at 686.056 kb on + strand, within SM_b21052at 686.057 kb on - strand, within SM_b21052at 686.057 kb on - strand, within SM_b21052at 686.057 kb on - strand, within SM_b21052at 686.064 kb on + strand, within SM_b21052at 686.064 kb on + strand, within SM_b21052at 686.065 kb on - strand, within SM_b21052at 686.065 kb on - strand, within SM_b21052at 686.115 kb on + strandat 686.115 kb on + strand, within SM_b21052at 686.115 kb on + strand, within SM_b21052at 686.116 kb on - strand, within SM_b21052at 686.116 kb on - strand, within SM_b21052at 686.116 kb on - strand, within SM_b21052at 686.118 kb on - strand, within SM_b21052at 686.227 kb on - strand, within SM_b21052at 686.393 kb on + strand, within SM_b21052at 686.394 kb on - strand, within SM_b21052at 686.394 kb on - strand, within SM_b21052at 686.482 kb on + strandat 686.483 kb on - strandat 686.483 kb on - strandat 686.483 kb on - strandat 686.686 kb on + strandat 686.687 kb on - strandat 686.698 kb on + strand, within SM_b21053at 686.848 kb on + strand, within SM_b21053at 686.849 kb on - strand, within SM_b21053at 686.850 kb on + strand, within SM_b21053at 686.850 kb on + strand, within SM_b21053at 686.850 kb on + strand, within SM_b21053at 686.851 kb on - strand, within SM_b21053at 686.851 kb on - strand, within SM_b21053at 686.851 kb on - strand, within SM_b21053at 686.851 kb on - strand, within SM_b21053at 686.870 kb on - strand, within SM_b21053at 686.912 kb on - strand, within SM_b21053at 686.912 kb on - strand, within SM_b21053at 686.934 kb on - strand, within SM_b21053at 686.956 kb on - strand, within SM_b21053at 687.062 kb on + strand, within SM_b21053at 687.062 kb on + strand, within SM_b21053at 687.062 kb on + strand, within SM_b21053at 687.191 kb on + strand, within SM_b21053at 687.212 kb on + strand, within SM_b21053at 687.242 kb on + strand, within SM_b21053at 687.242 kb on + strand, within SM_b21053at 687.304 kb on + strand, within SM_b21053at 687.377 kb on - strand, within SM_b21053at 687.401 kb on - strand, within SM_b21053at 687.496 kb on + strand, within SM_b21053at 687.497 kb on - strand, within SM_b21053at 687.497 kb on - strand, within SM_b21053at 687.514 kb on - strand, within SM_b21053at 687.607 kb on - strand, within SM_b21053at 687.607 kb on - strand, within SM_b21053at 687.683 kb on + strand, within SM_b21053at 687.684 kb on - strand, within SM_b21053at 687.786 kb on - strandat 687.797 kb on - strandat 687.824 kb on + strandat 687.824 kb on + strandat 687.824 kb on + strandat 687.825 kb on - strandat 687.831 kb on + strandat 687.831 kb on + strandat 687.831 kb on + strandat 687.832 kb on - strandat 687.832 kb on - strandat 687.832 kb on - strandat 687.832 kb on - strandat 687.947 kb on - strandat 687.947 kb on - strandat 687.947 kb on - strandat 687.949 kb on - strandat 687.949 kb on - strandat 687.961 kb on - strandat 688.015 kb on + strand, within SM_b21054at 688.051 kb on - strand, within SM_b21054at 688.190 kb on - strand, within SM_b21054at 688.204 kb on - strand, within SM_b21054at 688.204 kb on - strand, within SM_b21054at 688.216 kb on + strand, within SM_b21054at 688.217 kb on - strand, within SM_b21054at 688.249 kb on + strand, within SM_b21054at 688.250 kb on - strand, within SM_b21054at 688.276 kb on + strand, within SM_b21054at 688.286 kb on + strand, within SM_b21054at 688.287 kb on - strand, within SM_b21054at 688.302 kb on + strand, within SM_b21054at 688.395 kb on + strand, within SM_b21054at 688.406 kb on - strand, within SM_b21054at 688.447 kb on + strand, within SM_b21054at 688.518 kb on + strandat 688.518 kb on + strandat 688.519 kb on - strandat 688.519 kb on - strandat 688.519 kb on - strandat 688.519 kb on - strandat 688.545 kb on - strandat 688.565 kb on + strandat 688.566 kb on - strandat 688.566 kb on - strandat 688.613 kb on + strandat 688.614 kb on - strandat 688.641 kb on - strandat 688.641 kb on - strandat 688.680 kb on + strandat 688.718 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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685,572 - -0.1
685,709 + SM_b21052 0.13 +0.3
685,710 - SM_b21052 0.13 +0.2
685,745 - SM_b21052 0.17 +0.9
685,788 + SM_b21052 0.21 -0.4
685,789 - SM_b21052 0.22 -0.1
685,878 - SM_b21052 0.31 -0.7
685,935 + SM_b21052 0.37 +0.9
686,022 + SM_b21052 0.46 +0.4
686,023 - SM_b21052 0.46 -1.4
686,053 - SM_b21052 0.49 -4.3
686,056 + SM_b21052 0.49 +1.0
686,056 + SM_b21052 0.49 +2.1
686,057 - SM_b21052 0.49 +1.9
686,057 - SM_b21052 0.49 +1.0
686,057 - SM_b21052 0.49 +0.7
686,064 + SM_b21052 0.50 +0.9
686,064 + SM_b21052 0.50 -0.1
686,065 - SM_b21052 0.50 +0.6
686,065 - SM_b21052 0.50 -0.9
686,115 + +2.6
686,115 + SM_b21052 0.55 +0.1
686,115 + SM_b21052 0.55 -2.8
686,116 - SM_b21052 0.55 +0.3
686,116 - SM_b21052 0.55 +2.6
686,116 - SM_b21052 0.55 -0.8
686,118 - SM_b21052 0.56 -0.2
686,227 - SM_b21052 0.67 +0.5
686,393 + SM_b21052 0.84 +1.4
686,394 - SM_b21052 0.84 -0.3
686,394 - SM_b21052 0.84 +3.3
686,482 + +0.6
686,483 - +1.6
686,483 - -0.4
686,483 - -0.6
686,686 + +1.0
686,687 - +0.7
686,698 + SM_b21053 0.11 -0.4
686,848 + SM_b21053 0.23 -1.4
686,849 - SM_b21053 0.23 -3.6
686,850 + SM_b21053 0.23 +0.4
686,850 + SM_b21053 0.23 +1.3
686,850 + SM_b21053 0.23 -0.8
686,851 - SM_b21053 0.23 -0.0
686,851 - SM_b21053 0.23 -0.5
686,851 - SM_b21053 0.23 -1.4
686,851 - SM_b21053 0.23 +3.4
686,870 - SM_b21053 0.24 -0.9
686,912 - SM_b21053 0.28 +0.1
686,912 - SM_b21053 0.28 -1.2
686,934 - SM_b21053 0.29 +1.5
686,956 - SM_b21053 0.31 +1.1
687,062 + SM_b21053 0.40 -2.6
687,062 + SM_b21053 0.40 +0.1
687,062 + SM_b21053 0.40 -0.4
687,191 + SM_b21053 0.50 -0.8
687,212 + SM_b21053 0.52 -0.0
687,242 + SM_b21053 0.54 +2.3
687,242 + SM_b21053 0.54 +1.5
687,304 + SM_b21053 0.59 -0.7
687,377 - SM_b21053 0.65 -0.8
687,401 - SM_b21053 0.67 -1.2
687,496 + SM_b21053 0.74 -1.6
687,497 - SM_b21053 0.74 -0.0
687,497 - SM_b21053 0.74 -0.1
687,514 - SM_b21053 0.76 -1.0
687,607 - SM_b21053 0.83 -0.6
687,607 - SM_b21053 0.83 -1.1
687,683 + SM_b21053 0.89 -0.3
687,684 - SM_b21053 0.89 -1.2
687,786 - +1.1
687,797 - +0.2
687,824 + -0.7
687,824 + -0.0
687,824 + +0.3
687,825 - -1.7
687,831 + -2.4
687,831 + -0.2
687,831 + -1.4
687,832 - +0.3
687,832 - -0.4
687,832 - +0.9
687,832 - -0.7
687,947 - +0.6
687,947 - +0.7
687,947 - +0.2
687,949 - -0.7
687,949 - -1.7
687,961 - -0.1
688,015 + SM_b21054 0.18 -0.8
688,051 - SM_b21054 0.24 -0.2
688,190 - SM_b21054 0.46 +0.8
688,204 - SM_b21054 0.48 -1.6
688,204 - SM_b21054 0.48 +0.4
688,216 + SM_b21054 0.50 -1.3
688,217 - SM_b21054 0.50 -1.5
688,249 + SM_b21054 0.56 -0.8
688,250 - SM_b21054 0.56 -2.1
688,276 + SM_b21054 0.60 -1.3
688,286 + SM_b21054 0.62 -2.7
688,287 - SM_b21054 0.62 -0.3
688,302 + SM_b21054 0.64 -1.9
688,395 + SM_b21054 0.79 +0.1
688,406 - SM_b21054 0.81 +0.2
688,447 + SM_b21054 0.88 -0.8
688,518 + -1.4
688,518 + -3.0
688,519 - +0.9
688,519 - -1.2
688,519 - +0.9
688,519 - -0.4
688,545 - -0.3
688,565 + -1.1
688,566 - -0.3
688,566 - +3.7
688,613 + +2.5
688,614 - +0.9
688,641 - +2.1
688,641 - +0.6
688,680 + +0.0
688,718 + -1.2

Or see this region's nucleotide sequence