Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20939 and SM_b20940 overlap by 4 nucleotides SM_b20940 and SM_b20941 are separated by 144 nucleotides SM_b20941 and SM_b20942 are separated by 532 nucleotides
SM_b20939: SM_b20939 - 6-pyruvoyl-tetrahydropterin synthase, at 1,164,592 to 1,164,951
_b20939
SM_b20940: SM_b20940 - hypothetical protein, at 1,164,948 to 1,165,658
_b20940
SM_b20941: SM_b20941 - MsbA-like saccharide exporting ABC transporter ATP-binding/permease subunits, at 1,165,803 to 1,167,617
_b20941
SM_b20942: SM_b20942 - UDP glucose 4-epimerase, at 1,168,150 to 1,169,136
_b20942
Position (kb)
1165
1166
1167
1168 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.851 kb on + strand, within SM_b20939 at 1164.852 kb on - strand, within SM_b20939 at 1164.852 kb on - strand, within SM_b20939 at 1165.100 kb on + strand, within SM_b20940 at 1165.100 kb on + strand, within SM_b20940 at 1165.100 kb on + strand, within SM_b20940 at 1165.100 kb on + strand, within SM_b20940 at 1165.101 kb on - strand, within SM_b20940 at 1165.101 kb on - strand, within SM_b20940 at 1165.102 kb on + strand, within SM_b20940 at 1165.102 kb on + strand, within SM_b20940 at 1165.102 kb on + strand, within SM_b20940 at 1165.102 kb on + strand, within SM_b20940 at 1165.103 kb on - strand, within SM_b20940 at 1165.190 kb on - strand, within SM_b20940 at 1165.207 kb on + strand, within SM_b20940 at 1165.273 kb on + strand, within SM_b20940 at 1165.274 kb on - strand, within SM_b20940 at 1165.408 kb on + strand, within SM_b20940 at 1165.409 kb on - strand, within SM_b20940 at 1165.409 kb on - strand, within SM_b20940 at 1165.541 kb on + strand, within SM_b20940 at 1165.542 kb on - strand, within SM_b20940 at 1165.559 kb on - strand, within SM_b20940 at 1165.559 kb on - strand, within SM_b20940 at 1165.644 kb on + strand at 1165.645 kb on - strand at 1165.703 kb on + strand at 1165.704 kb on - strand at 1165.704 kb on - strand at 1165.704 kb on - strand at 1165.718 kb on - strand at 1165.867 kb on + strand at 1165.867 kb on + strand at 1165.868 kb on - strand at 1165.959 kb on + strand at 1165.960 kb on - strand at 1165.960 kb on - strand at 1166.267 kb on - strand, within SM_b20941 at 1166.267 kb on - strand, within SM_b20941 at 1166.267 kb on - strand, within SM_b20941 at 1166.363 kb on + strand, within SM_b20941 at 1166.416 kb on - strand, within SM_b20941 at 1166.506 kb on + strand, within SM_b20941 at 1166.507 kb on - strand, within SM_b20941 at 1166.531 kb on - strand, within SM_b20941 at 1166.531 kb on - strand, within SM_b20941 at 1166.736 kb on + strand, within SM_b20941 at 1166.736 kb on + strand, within SM_b20941 at 1166.737 kb on - strand, within SM_b20941 at 1166.737 kb on - strand, within SM_b20941 at 1166.737 kb on - strand, within SM_b20941 at 1166.737 kb on - strand, within SM_b20941 at 1166.737 kb on - strand, within SM_b20941 at 1166.737 kb on - strand, within SM_b20941 at 1166.945 kb on + strand, within SM_b20941 at 1166.945 kb on + strand, within SM_b20941 at 1167.025 kb on + strand, within SM_b20941 at 1167.026 kb on - strand, within SM_b20941 at 1167.104 kb on - strand, within SM_b20941 at 1167.144 kb on - strand, within SM_b20941 at 1167.144 kb on - strand, within SM_b20941 at 1167.476 kb on + strand at 1167.477 kb on - strand at 1167.511 kb on - strand at 1167.608 kb on + strand at 1167.617 kb on + strand at 1167.617 kb on + strand at 1167.617 kb on + strand at 1167.618 kb on - strand at 1167.719 kb on - strand at 1167.811 kb on - strand at 1167.835 kb on + strand at 1167.836 kb on - strand at 1167.871 kb on - strand at 1167.902 kb on + strand at 1167.969 kb on + strand at 1168.190 kb on - strand at 1168.423 kb on + strand, within SM_b20942 at 1168.554 kb on + strand, within SM_b20942
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,164,851 + SM_b20939 0.72 +1.8 1,164,851 + SM_b20939 0.72 -0.3 1,164,851 + SM_b20939 0.72 -1.8 1,164,851 + SM_b20939 0.72 +0.8 1,164,851 + SM_b20939 0.72 +0.7 1,164,851 + SM_b20939 0.72 -0.7 1,164,852 - SM_b20939 0.72 +0.1 1,164,852 - SM_b20939 0.72 +1.2 1,165,100 + SM_b20940 0.21 +0.1 1,165,100 + SM_b20940 0.21 +0.1 1,165,100 + SM_b20940 0.21 +1.3 1,165,100 + SM_b20940 0.21 -1.7 1,165,101 - SM_b20940 0.22 -1.1 1,165,101 - SM_b20940 0.22 -0.4 1,165,102 + SM_b20940 0.22 -2.0 1,165,102 + SM_b20940 0.22 -0.7 1,165,102 + SM_b20940 0.22 +0.0 1,165,102 + SM_b20940 0.22 -1.4 1,165,103 - SM_b20940 0.22 +2.9 1,165,190 - SM_b20940 0.34 +1.0 1,165,207 + SM_b20940 0.36 +0.5 1,165,273 + SM_b20940 0.46 +0.7 1,165,274 - SM_b20940 0.46 -0.7 1,165,408 + SM_b20940 0.65 +1.9 1,165,409 - SM_b20940 0.65 -1.7 1,165,409 - SM_b20940 0.65 +3.2 1,165,541 + SM_b20940 0.83 +0.4 1,165,542 - SM_b20940 0.84 -0.3 1,165,559 - SM_b20940 0.86 -0.6 1,165,559 - SM_b20940 0.86 +0.2 1,165,644 + -0.9 1,165,645 - -0.1 1,165,703 + -1.6 1,165,704 - +0.4 1,165,704 - +2.3 1,165,704 - -1.1 1,165,718 - -0.5 1,165,867 + -1.8 1,165,867 + +3.2 1,165,868 - -0.4 1,165,959 + +0.4 1,165,960 - +1.1 1,165,960 - +0.8 1,166,267 - SM_b20941 0.26 -2.4 1,166,267 - SM_b20941 0.26 +0.7 1,166,267 - SM_b20941 0.26 -1.5 1,166,363 + SM_b20941 0.31 +1.0 1,166,416 - SM_b20941 0.34 -1.6 1,166,506 + SM_b20941 0.39 -0.8 1,166,507 - SM_b20941 0.39 -0.5 1,166,531 - SM_b20941 0.40 +0.5 1,166,531 - SM_b20941 0.40 -0.6 1,166,736 + SM_b20941 0.51 -0.3 1,166,736 + SM_b20941 0.51 +4.5 1,166,737 - SM_b20941 0.51 -0.2 1,166,737 - SM_b20941 0.51 -1.3 1,166,737 - SM_b20941 0.51 -3.0 1,166,737 - SM_b20941 0.51 -0.9 1,166,737 - SM_b20941 0.51 -0.4 1,166,737 - SM_b20941 0.51 +0.1 1,166,945 + SM_b20941 0.63 +0.8 1,166,945 + SM_b20941 0.63 -0.9 1,167,025 + SM_b20941 0.67 -3.7 1,167,026 - SM_b20941 0.67 -0.4 1,167,104 - SM_b20941 0.72 -1.7 1,167,144 - SM_b20941 0.74 -2.4 1,167,144 - SM_b20941 0.74 -0.3 1,167,476 + +1.6 1,167,477 - -0.2 1,167,511 - +1.5 1,167,608 + +0.0 1,167,617 + +0.7 1,167,617 + -2.1 1,167,617 + +0.7 1,167,618 - -0.4 1,167,719 - -0.0 1,167,811 - -0.2 1,167,835 + -0.2 1,167,836 - +0.9 1,167,871 - -0.6 1,167,902 + -0.2 1,167,969 + +0.5 1,168,190 - -1.8 1,168,423 + SM_b20942 0.28 +3.2 1,168,554 + SM_b20942 0.41 +0.1
Or see this region's nucleotide sequence