Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20941

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20939 and SM_b20940 overlap by 4 nucleotidesSM_b20940 and SM_b20941 are separated by 144 nucleotidesSM_b20941 and SM_b20942 are separated by 532 nucleotides SM_b20939: SM_b20939 - 6-pyruvoyl-tetrahydropterin synthase, at 1,164,592 to 1,164,951 _b20939 SM_b20940: SM_b20940 - hypothetical protein, at 1,164,948 to 1,165,658 _b20940 SM_b20941: SM_b20941 - MsbA-like saccharide exporting ABC transporter ATP-binding/permease subunits, at 1,165,803 to 1,167,617 _b20941 SM_b20942: SM_b20942 - UDP glucose 4-epimerase, at 1,168,150 to 1,169,136 _b20942 Position (kb) 1165 1166 1167 1168Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1164.851 kb on + strand, within SM_b20939at 1164.851 kb on + strand, within SM_b20939at 1164.851 kb on + strand, within SM_b20939at 1164.851 kb on + strand, within SM_b20939at 1164.851 kb on + strand, within SM_b20939at 1164.851 kb on + strand, within SM_b20939at 1164.852 kb on - strand, within SM_b20939at 1164.852 kb on - strand, within SM_b20939at 1165.100 kb on + strand, within SM_b20940at 1165.100 kb on + strand, within SM_b20940at 1165.100 kb on + strand, within SM_b20940at 1165.100 kb on + strand, within SM_b20940at 1165.101 kb on - strand, within SM_b20940at 1165.101 kb on - strand, within SM_b20940at 1165.102 kb on + strand, within SM_b20940at 1165.102 kb on + strand, within SM_b20940at 1165.102 kb on + strand, within SM_b20940at 1165.102 kb on + strand, within SM_b20940at 1165.103 kb on - strand, within SM_b20940at 1165.190 kb on - strand, within SM_b20940at 1165.207 kb on + strand, within SM_b20940at 1165.273 kb on + strand, within SM_b20940at 1165.274 kb on - strand, within SM_b20940at 1165.408 kb on + strand, within SM_b20940at 1165.409 kb on - strand, within SM_b20940at 1165.409 kb on - strand, within SM_b20940at 1165.541 kb on + strand, within SM_b20940at 1165.542 kb on - strand, within SM_b20940at 1165.559 kb on - strand, within SM_b20940at 1165.559 kb on - strand, within SM_b20940at 1165.644 kb on + strandat 1165.645 kb on - strandat 1165.703 kb on + strandat 1165.704 kb on - strandat 1165.704 kb on - strandat 1165.704 kb on - strandat 1165.718 kb on - strandat 1165.867 kb on + strandat 1165.867 kb on + strandat 1165.868 kb on - strandat 1165.959 kb on + strandat 1165.960 kb on - strandat 1165.960 kb on - strandat 1166.267 kb on - strand, within SM_b20941at 1166.267 kb on - strand, within SM_b20941at 1166.267 kb on - strand, within SM_b20941at 1166.363 kb on + strand, within SM_b20941at 1166.416 kb on - strand, within SM_b20941at 1166.506 kb on + strand, within SM_b20941at 1166.507 kb on - strand, within SM_b20941at 1166.531 kb on - strand, within SM_b20941at 1166.531 kb on - strand, within SM_b20941at 1166.736 kb on + strand, within SM_b20941at 1166.736 kb on + strand, within SM_b20941at 1166.737 kb on - strand, within SM_b20941at 1166.737 kb on - strand, within SM_b20941at 1166.737 kb on - strand, within SM_b20941at 1166.737 kb on - strand, within SM_b20941at 1166.737 kb on - strand, within SM_b20941at 1166.737 kb on - strand, within SM_b20941at 1166.945 kb on + strand, within SM_b20941at 1166.945 kb on + strand, within SM_b20941at 1167.025 kb on + strand, within SM_b20941at 1167.026 kb on - strand, within SM_b20941at 1167.104 kb on - strand, within SM_b20941at 1167.144 kb on - strand, within SM_b20941at 1167.144 kb on - strand, within SM_b20941at 1167.476 kb on + strandat 1167.477 kb on - strandat 1167.511 kb on - strandat 1167.608 kb on + strandat 1167.617 kb on + strandat 1167.617 kb on + strandat 1167.617 kb on + strandat 1167.618 kb on - strandat 1167.719 kb on - strandat 1167.811 kb on - strandat 1167.835 kb on + strandat 1167.836 kb on - strandat 1167.871 kb on - strandat 1167.902 kb on + strandat 1167.969 kb on + strandat 1168.190 kb on - strandat 1168.423 kb on + strand, within SM_b20942at 1168.554 kb on + strand, within SM_b20942

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,164,851 + SM_b20939 0.72 +1.8
1,164,851 + SM_b20939 0.72 -0.3
1,164,851 + SM_b20939 0.72 -1.8
1,164,851 + SM_b20939 0.72 +0.8
1,164,851 + SM_b20939 0.72 +0.7
1,164,851 + SM_b20939 0.72 -0.7
1,164,852 - SM_b20939 0.72 +0.1
1,164,852 - SM_b20939 0.72 +1.2
1,165,100 + SM_b20940 0.21 +0.1
1,165,100 + SM_b20940 0.21 +0.1
1,165,100 + SM_b20940 0.21 +1.3
1,165,100 + SM_b20940 0.21 -1.7
1,165,101 - SM_b20940 0.22 -1.1
1,165,101 - SM_b20940 0.22 -0.4
1,165,102 + SM_b20940 0.22 -2.0
1,165,102 + SM_b20940 0.22 -0.7
1,165,102 + SM_b20940 0.22 +0.0
1,165,102 + SM_b20940 0.22 -1.4
1,165,103 - SM_b20940 0.22 +2.9
1,165,190 - SM_b20940 0.34 +1.0
1,165,207 + SM_b20940 0.36 +0.5
1,165,273 + SM_b20940 0.46 +0.7
1,165,274 - SM_b20940 0.46 -0.7
1,165,408 + SM_b20940 0.65 +1.9
1,165,409 - SM_b20940 0.65 -1.7
1,165,409 - SM_b20940 0.65 +3.2
1,165,541 + SM_b20940 0.83 +0.4
1,165,542 - SM_b20940 0.84 -0.3
1,165,559 - SM_b20940 0.86 -0.6
1,165,559 - SM_b20940 0.86 +0.2
1,165,644 + -0.9
1,165,645 - -0.1
1,165,703 + -1.6
1,165,704 - +0.4
1,165,704 - +2.3
1,165,704 - -1.1
1,165,718 - -0.5
1,165,867 + -1.8
1,165,867 + +3.2
1,165,868 - -0.4
1,165,959 + +0.4
1,165,960 - +1.1
1,165,960 - +0.8
1,166,267 - SM_b20941 0.26 -2.4
1,166,267 - SM_b20941 0.26 +0.7
1,166,267 - SM_b20941 0.26 -1.5
1,166,363 + SM_b20941 0.31 +1.0
1,166,416 - SM_b20941 0.34 -1.6
1,166,506 + SM_b20941 0.39 -0.8
1,166,507 - SM_b20941 0.39 -0.5
1,166,531 - SM_b20941 0.40 +0.5
1,166,531 - SM_b20941 0.40 -0.6
1,166,736 + SM_b20941 0.51 -0.3
1,166,736 + SM_b20941 0.51 +4.5
1,166,737 - SM_b20941 0.51 -0.2
1,166,737 - SM_b20941 0.51 -1.3
1,166,737 - SM_b20941 0.51 -3.0
1,166,737 - SM_b20941 0.51 -0.9
1,166,737 - SM_b20941 0.51 -0.4
1,166,737 - SM_b20941 0.51 +0.1
1,166,945 + SM_b20941 0.63 +0.8
1,166,945 + SM_b20941 0.63 -0.9
1,167,025 + SM_b20941 0.67 -3.7
1,167,026 - SM_b20941 0.67 -0.4
1,167,104 - SM_b20941 0.72 -1.7
1,167,144 - SM_b20941 0.74 -2.4
1,167,144 - SM_b20941 0.74 -0.3
1,167,476 + +1.6
1,167,477 - -0.2
1,167,511 - +1.5
1,167,608 + +0.0
1,167,617 + +0.7
1,167,617 + -2.1
1,167,617 + +0.7
1,167,618 - -0.4
1,167,719 - -0.0
1,167,811 - -0.2
1,167,835 + -0.2
1,167,836 - +0.9
1,167,871 - -0.6
1,167,902 + -0.2
1,167,969 + +0.5
1,168,190 - -1.8
1,168,423 + SM_b20942 0.28 +3.2
1,168,554 + SM_b20942 0.41 +0.1

Or see this region's nucleotide sequence