Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20882 and SM_b20883 are separated by 183 nucleotides SM_b20883 and SM_b20884 are separated by 42 nucleotides SM_b20884 and SM_b20885 are separated by 48 nucleotides
SM_b20882: SM_b20882 - hypothetical protein, at 1,288,541 to 1,288,990
_b20882
SM_b20883: SM_b20883 - hypothetical protein, at 1,289,174 to 1,289,641
_b20883
SM_b20884: SM_b20884 - hypothetical protein, at 1,289,684 to 1,290,118
_b20884
SM_b20885: SM_b20885 - hypothetical protein, at 1,290,167 to 1,291,087
_b20885
Position (kb)
1289
1290
1291 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1288.841 kb on + strand, within SM_b20882 at 1289.015 kb on + strand at 1289.016 kb on - strand at 1289.018 kb on + strand at 1289.019 kb on - strand at 1289.019 kb on - strand at 1289.112 kb on + strand at 1289.113 kb on - strand at 1289.113 kb on - strand at 1289.113 kb on - strand at 1289.116 kb on + strand at 1289.117 kb on - strand at 1289.117 kb on - strand at 1289.261 kb on + strand, within SM_b20883 at 1289.557 kb on + strand, within SM_b20883 at 1289.557 kb on + strand, within SM_b20883 at 1290.058 kb on + strand, within SM_b20884 at 1290.059 kb on - strand, within SM_b20884 at 1290.158 kb on + strand at 1290.158 kb on + strand at 1290.158 kb on + strand at 1290.237 kb on + strand at 1290.237 kb on + strand at 1290.237 kb on + strand at 1290.238 kb on - strand at 1290.238 kb on - strand at 1290.257 kb on + strand at 1290.257 kb on + strand at 1290.258 kb on - strand at 1290.340 kb on - strand, within SM_b20885 at 1290.340 kb on - strand, within SM_b20885 at 1290.384 kb on + strand, within SM_b20885 at 1290.384 kb on + strand, within SM_b20885 at 1290.385 kb on - strand, within SM_b20885 at 1290.385 kb on - strand, within SM_b20885 at 1290.454 kb on + strand, within SM_b20885 at 1290.522 kb on + strand, within SM_b20885 at 1290.522 kb on + strand, within SM_b20885 at 1290.523 kb on - strand, within SM_b20885 at 1290.523 kb on - strand, within SM_b20885 at 1290.523 kb on - strand, within SM_b20885 at 1290.523 kb on - strand, within SM_b20885 at 1290.523 kb on - strand, within SM_b20885 at 1290.523 kb on - strand, within SM_b20885 at 1290.564 kb on + strand, within SM_b20885 at 1290.588 kb on + strand, within SM_b20885 at 1290.712 kb on + strand, within SM_b20885 at 1290.846 kb on - strand, within SM_b20885 at 1290.858 kb on + strand at 1290.858 kb on + strand, within SM_b20885 at 1290.859 kb on - strand, within SM_b20885 at 1290.859 kb on - strand, within SM_b20885 at 1290.976 kb on - strand, within SM_b20885 at 1290.976 kb on - strand, within SM_b20885 at 1291.020 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,288,841 + SM_b20882 0.67 +0.4 1,289,015 + +1.2 1,289,016 - +0.3 1,289,018 + +0.9 1,289,019 - -0.7 1,289,019 - -0.1 1,289,112 + -0.1 1,289,113 - -2.5 1,289,113 - +1.2 1,289,113 - +0.3 1,289,116 + -0.9 1,289,117 - +0.9 1,289,117 - -2.0 1,289,261 + SM_b20883 0.19 +0.4 1,289,557 + SM_b20883 0.82 -0.1 1,289,557 + SM_b20883 0.82 -0.2 1,290,058 + SM_b20884 0.86 +1.0 1,290,059 - SM_b20884 0.86 +0.9 1,290,158 + -0.8 1,290,158 + -0.5 1,290,158 + +0.4 1,290,237 + +1.0 1,290,237 + -0.2 1,290,237 + -3.6 1,290,238 - -0.6 1,290,238 - -0.4 1,290,257 + +0.0 1,290,257 + -0.6 1,290,258 - +0.3 1,290,340 - SM_b20885 0.19 +1.4 1,290,340 - SM_b20885 0.19 -0.1 1,290,384 + SM_b20885 0.24 -0.6 1,290,384 + SM_b20885 0.24 +1.1 1,290,385 - SM_b20885 0.24 -0.8 1,290,385 - SM_b20885 0.24 -1.8 1,290,454 + SM_b20885 0.31 +1.5 1,290,522 + SM_b20885 0.39 -0.7 1,290,522 + SM_b20885 0.39 -2.8 1,290,523 - SM_b20885 0.39 -0.2 1,290,523 - SM_b20885 0.39 -1.1 1,290,523 - SM_b20885 0.39 -0.4 1,290,523 - SM_b20885 0.39 -0.0 1,290,523 - SM_b20885 0.39 -3.2 1,290,523 - SM_b20885 0.39 -0.4 1,290,564 + SM_b20885 0.43 -2.0 1,290,588 + SM_b20885 0.46 -1.5 1,290,712 + SM_b20885 0.59 +0.8 1,290,846 - SM_b20885 0.74 -1.1 1,290,858 + +3.0 1,290,858 + SM_b20885 0.75 +0.1 1,290,859 - SM_b20885 0.75 +0.3 1,290,859 - SM_b20885 0.75 -2.4 1,290,976 - SM_b20885 0.88 -1.0 1,290,976 - SM_b20885 0.88 +1.4 1,291,020 + +0.8
Or see this region's nucleotide sequence