Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20786

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20784 and SM_b20785 overlap by 20 nucleotidesSM_b20785 and SM_b20786 overlap by 4 nucleotidesSM_b20786 and SM_b20787 are separated by 6 nucleotidesSM_b20787 and SM_b20568 are separated by 101 nucleotides SM_b20784: SM_b20784 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,577,129 to 1,577,845 _b20784 SM_b20785: SM_b20785 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,577,826 to 1,578,590 _b20785 SM_b20786: SM_b20786 - branched-chain amino acid ABC transporter permease, at 1,578,587 to 1,579,588 _b20786 SM_b20787: SM_b20787 - branched-chain amino acid ABC transporter permease, at 1,579,595 to 1,580,458 _b20787 SM_b20568: SM_b20568 - amino acid ABC transporter substrate-binding protein, at 1,580,560 to 1,581,771 _b20568 Position (kb) 1578 1579 1580Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1577.674 kb on - strand, within SM_b20784at 1577.674 kb on - strand, within SM_b20784at 1577.852 kb on - strandat 1577.863 kb on + strandat 1577.864 kb on - strandat 1578.408 kb on + strand, within SM_b20785at 1578.909 kb on + strand, within SM_b20786at 1578.909 kb on + strand, within SM_b20786at 1578.910 kb on - strand, within SM_b20786at 1578.910 kb on - strand, within SM_b20786at 1579.062 kb on + strand, within SM_b20786at 1579.063 kb on - strand, within SM_b20786at 1579.063 kb on - strand, within SM_b20786at 1579.344 kb on + strand, within SM_b20786at 1579.421 kb on + strand, within SM_b20786at 1579.421 kb on + strand, within SM_b20786at 1579.482 kb on + strand, within SM_b20786at 1579.483 kb on - strand, within SM_b20786at 1579.596 kb on + strandat 1579.596 kb on + strandat 1579.596 kb on + strandat 1579.597 kb on - strandat 1579.597 kb on - strandat 1579.600 kb on + strandat 1579.600 kb on + strandat 1579.600 kb on + strandat 1579.600 kb on + strandat 1579.600 kb on + strandat 1579.601 kb on - strandat 1579.601 kb on - strandat 1579.601 kb on - strandat 1579.656 kb on + strandat 1579.656 kb on + strandat 1579.657 kb on - strandat 1579.689 kb on + strand, within SM_b20787at 1579.703 kb on - strand, within SM_b20787at 1579.795 kb on - strand, within SM_b20787at 1579.795 kb on - strand, within SM_b20787at 1579.806 kb on + strand, within SM_b20787at 1579.806 kb on + strand, within SM_b20787at 1579.807 kb on - strand, within SM_b20787at 1579.809 kb on + strand, within SM_b20787at 1579.890 kb on + strand, within SM_b20787at 1579.891 kb on - strand, within SM_b20787at 1580.030 kb on + strand, within SM_b20787at 1580.124 kb on + strand, within SM_b20787at 1580.125 kb on - strand, within SM_b20787at 1580.196 kb on + strand, within SM_b20787at 1580.196 kb on + strand, within SM_b20787at 1580.197 kb on - strand, within SM_b20787at 1580.209 kb on - strand, within SM_b20787at 1580.304 kb on + strand, within SM_b20787at 1580.305 kb on - strand, within SM_b20787at 1580.315 kb on - strand, within SM_b20787at 1580.316 kb on + strand, within SM_b20787at 1580.438 kb on + strandat 1580.470 kb on - strandat 1580.544 kb on + strandat 1580.545 kb on - strandat 1580.545 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,577,674 - SM_b20784 0.76 -0.8
1,577,674 - SM_b20784 0.76 +0.2
1,577,852 - +0.9
1,577,863 + -0.9
1,577,864 - -0.5
1,578,408 + SM_b20785 0.76 +2.1
1,578,909 + SM_b20786 0.32 -2.5
1,578,909 + SM_b20786 0.32 +0.9
1,578,910 - SM_b20786 0.32 -0.9
1,578,910 - SM_b20786 0.32 -1.2
1,579,062 + SM_b20786 0.47 +0.6
1,579,063 - SM_b20786 0.48 -0.6
1,579,063 - SM_b20786 0.48 -0.1
1,579,344 + SM_b20786 0.76 +2.2
1,579,421 + SM_b20786 0.83 -0.2
1,579,421 + SM_b20786 0.83 +0.4
1,579,482 + SM_b20786 0.89 +1.2
1,579,483 - SM_b20786 0.89 -0.1
1,579,596 + +2.0
1,579,596 + -0.9
1,579,596 + +0.0
1,579,597 - -0.1
1,579,597 - +1.0
1,579,600 + +2.0
1,579,600 + -0.3
1,579,600 + -1.7
1,579,600 + +1.1
1,579,600 + -1.9
1,579,601 - +0.6
1,579,601 - +1.1
1,579,601 - +1.0
1,579,656 + +1.3
1,579,656 + +0.8
1,579,657 - +2.0
1,579,689 + SM_b20787 0.11 -0.1
1,579,703 - SM_b20787 0.12 -0.8
1,579,795 - SM_b20787 0.23 -1.6
1,579,795 - SM_b20787 0.23 -0.3
1,579,806 + SM_b20787 0.24 -0.6
1,579,806 + SM_b20787 0.24 +0.4
1,579,807 - SM_b20787 0.25 +0.1
1,579,809 + SM_b20787 0.25 -1.1
1,579,890 + SM_b20787 0.34 +0.6
1,579,891 - SM_b20787 0.34 -1.2
1,580,030 + SM_b20787 0.50 -1.4
1,580,124 + SM_b20787 0.61 -0.3
1,580,125 - SM_b20787 0.61 -0.9
1,580,196 + SM_b20787 0.70 +0.4
1,580,196 + SM_b20787 0.70 +0.0
1,580,197 - SM_b20787 0.70 +1.4
1,580,209 - SM_b20787 0.71 -0.9
1,580,304 + SM_b20787 0.82 +1.4
1,580,305 - SM_b20787 0.82 +0.1
1,580,315 - SM_b20787 0.83 -0.4
1,580,316 + SM_b20787 0.83 +1.6
1,580,438 + -2.0
1,580,470 - +0.8
1,580,544 + -1.7
1,580,545 - -2.8
1,580,545 - -0.6

Or see this region's nucleotide sequence