Experiment: L-Arginine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20622 and SM_b20623 are separated by 135 nucleotides SM_b20623 and SM_b20624 overlap by 4 nucleotides
SM_b20622: SM_b20622 - sugar uptake ABC transporter ATP-binding protein, at 1,641,558 to 1,643,081
_b20622
SM_b20623: SM_b20623 - methylthioribose kinase, at 1,643,217 to 1,644,488
_b20623
SM_b20624: SM_b20624 - methylthioribose-1-phosphate isomerase, at 1,644,485 to 1,645,579
_b20624
Position (kb)
1643
1644
1645 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 1642.378 kb on + strand, within SM_b20622 at 1642.378 kb on + strand at 1642.478 kb on + strand, within SM_b20622 at 1642.478 kb on + strand, within SM_b20622 at 1642.479 kb on - strand, within SM_b20622 at 1642.480 kb on + strand, within SM_b20622 at 1642.480 kb on + strand, within SM_b20622 at 1642.481 kb on - strand, within SM_b20622 at 1642.481 kb on - strand, within SM_b20622 at 1642.481 kb on - strand, within SM_b20622 at 1642.481 kb on - strand, within SM_b20622 at 1642.481 kb on - strand, within SM_b20622 at 1642.481 kb on - strand, within SM_b20622 at 1642.577 kb on + strand, within SM_b20622 at 1642.916 kb on - strand, within SM_b20622 at 1642.916 kb on - strand, within SM_b20622 at 1642.916 kb on - strand, within SM_b20622 at 1643.105 kb on + strand at 1643.105 kb on + strand at 1643.106 kb on - strand at 1643.160 kb on + strand at 1643.160 kb on + strand at 1643.161 kb on - strand at 1643.161 kb on - strand at 1643.217 kb on - strand at 1643.412 kb on + strand, within SM_b20623 at 1643.412 kb on + strand, within SM_b20623 at 1643.413 kb on - strand, within SM_b20623 at 1643.413 kb on - strand, within SM_b20623 at 1643.563 kb on - strand, within SM_b20623 at 1643.563 kb on - strand, within SM_b20623 at 1643.621 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.623 kb on + strand, within SM_b20623 at 1643.624 kb on - strand, within SM_b20623 at 1643.624 kb on - strand, within SM_b20623 at 1643.624 kb on - strand, within SM_b20623 at 1643.968 kb on + strand, within SM_b20623 at 1643.969 kb on - strand, within SM_b20623 at 1643.988 kb on + strand, within SM_b20623 at 1643.989 kb on - strand, within SM_b20623 at 1643.989 kb on - strand, within SM_b20623 at 1643.989 kb on - strand, within SM_b20623 at 1644.042 kb on + strand, within SM_b20623 at 1644.042 kb on + strand, within SM_b20623 at 1644.043 kb on - strand, within SM_b20623 at 1644.099 kb on + strand, within SM_b20623 at 1644.261 kb on - strand, within SM_b20623 at 1644.506 kb on + strand at 1644.507 kb on - strand at 1644.511 kb on + strand at 1644.512 kb on - strand at 1644.512 kb on - strand at 1645.004 kb on + strand at 1645.029 kb on - strand, within SM_b20624 at 1645.064 kb on + strand, within SM_b20624 at 1645.064 kb on + strand, within SM_b20624 at 1645.065 kb on - strand, within SM_b20624 at 1645.301 kb on + strand, within SM_b20624 at 1645.302 kb on - strand, within SM_b20624
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine (N) remove 1,642,378 + SM_b20622 0.54 -1.2 1,642,378 + +4.0 1,642,478 + SM_b20622 0.60 +1.8 1,642,478 + SM_b20622 0.60 +1.4 1,642,479 - SM_b20622 0.60 +5.6 1,642,480 + SM_b20622 0.60 +1.6 1,642,480 + SM_b20622 0.60 -0.9 1,642,481 - SM_b20622 0.61 -1.6 1,642,481 - SM_b20622 0.61 -0.9 1,642,481 - SM_b20622 0.61 +0.5 1,642,481 - SM_b20622 0.61 -0.0 1,642,481 - SM_b20622 0.61 +2.0 1,642,481 - SM_b20622 0.61 -0.6 1,642,577 + SM_b20622 0.67 +0.2 1,642,916 - SM_b20622 0.89 +1.4 1,642,916 - SM_b20622 0.89 -1.2 1,642,916 - SM_b20622 0.89 -1.4 1,643,105 + +0.5 1,643,105 + -0.0 1,643,106 - -0.7 1,643,160 + +0.1 1,643,160 + +0.9 1,643,161 - -0.5 1,643,161 - +0.2 1,643,217 - -1.9 1,643,412 + SM_b20623 0.15 +2.7 1,643,412 + SM_b20623 0.15 +0.5 1,643,413 - SM_b20623 0.15 -0.2 1,643,413 - SM_b20623 0.15 +1.6 1,643,563 - SM_b20623 0.27 +0.3 1,643,563 - SM_b20623 0.27 -1.5 1,643,621 + SM_b20623 0.32 -0.6 1,643,623 + SM_b20623 0.32 -1.7 1,643,623 + SM_b20623 0.32 +0.4 1,643,623 + SM_b20623 0.32 +1.1 1,643,623 + SM_b20623 0.32 +0.6 1,643,623 + SM_b20623 0.32 +1.0 1,643,623 + SM_b20623 0.32 +0.6 1,643,623 + SM_b20623 0.32 -1.9 1,643,623 + SM_b20623 0.32 -1.1 1,643,623 + SM_b20623 0.32 +0.0 1,643,624 - SM_b20623 0.32 -2.4 1,643,624 - SM_b20623 0.32 -1.3 1,643,624 - SM_b20623 0.32 +1.9 1,643,968 + SM_b20623 0.59 -0.6 1,643,969 - SM_b20623 0.59 -0.1 1,643,988 + SM_b20623 0.61 -0.7 1,643,989 - SM_b20623 0.61 +0.6 1,643,989 - SM_b20623 0.61 -1.2 1,643,989 - SM_b20623 0.61 -1.3 1,644,042 + SM_b20623 0.65 +0.9 1,644,042 + SM_b20623 0.65 -1.8 1,644,043 - SM_b20623 0.65 +2.4 1,644,099 + SM_b20623 0.69 +2.0 1,644,261 - SM_b20623 0.82 +0.7 1,644,506 + +2.7 1,644,507 - +1.0 1,644,511 + +0.4 1,644,512 - +0.4 1,644,512 - +0.2 1,645,004 + +1.4 1,645,029 - SM_b20624 0.50 +1.2 1,645,064 + SM_b20624 0.53 -2.2 1,645,064 + SM_b20624 0.53 -0.3 1,645,065 - SM_b20624 0.53 -2.3 1,645,301 + SM_b20624 0.75 -0.6 1,645,302 - SM_b20624 0.75 +0.4
Or see this region's nucleotide sequence