Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20587

Experiment: L-Arginine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20586 and SM_b20587 are separated by 130 nucleotidesSM_b20587 and SM_b20588 are separated by 13 nucleotidesSM_b20588 and SM_b20589 overlap by 1 nucleotides SM_b20586: SM_b20586 - IclR family transcriptional regulator, at 1,601,452 to 1,602,207 _b20586 SM_b20587: SM_b20587 - CoA-transferase subunit A protein, at 1,602,338 to 1,603,198 _b20587 SM_b20588: SM_b20588 - CoA-transferase subunit B protein, at 1,603,212 to 1,603,997 _b20588 SM_b20589: SM_b20589 - beta-ketoadipyl CoA thiolase, at 1,603,997 to 1,605,199 _b20589 Position (kb) 1602 1603 1604Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1601.802 kb on - strand, within SM_b20586at 1601.871 kb on - strand, within SM_b20586at 1601.942 kb on + strand, within SM_b20586at 1601.943 kb on - strand, within SM_b20586at 1601.943 kb on - strand, within SM_b20586at 1601.955 kb on + strand, within SM_b20586at 1601.981 kb on + strand, within SM_b20586at 1601.982 kb on - strand, within SM_b20586at 1601.982 kb on - strand, within SM_b20586at 1601.982 kb on - strand, within SM_b20586at 1602.211 kb on - strandat 1602.307 kb on + strandat 1602.307 kb on + strandat 1602.370 kb on - strandat 1602.370 kb on - strandat 1602.394 kb on + strandat 1602.432 kb on - strand, within SM_b20587at 1602.506 kb on + strand, within SM_b20587at 1602.507 kb on - strand, within SM_b20587at 1602.668 kb on + strand, within SM_b20587at 1602.669 kb on - strand, within SM_b20587at 1602.714 kb on - strand, within SM_b20587at 1602.733 kb on + strand, within SM_b20587at 1602.733 kb on + strand, within SM_b20587at 1602.748 kb on + strand, within SM_b20587at 1603.034 kb on + strand, within SM_b20587at 1603.035 kb on - strand, within SM_b20587at 1603.046 kb on + strand, within SM_b20587at 1603.046 kb on + strand, within SM_b20587at 1603.047 kb on - strand, within SM_b20587at 1603.049 kb on + strand, within SM_b20587at 1603.050 kb on - strand, within SM_b20587at 1603.070 kb on + strand, within SM_b20587at 1603.071 kb on - strand, within SM_b20587at 1603.071 kb on - strand, within SM_b20587at 1603.071 kb on - strand, within SM_b20587at 1603.071 kb on - strand, within SM_b20587at 1603.359 kb on + strand, within SM_b20588at 1603.359 kb on + strand, within SM_b20588at 1603.360 kb on - strand, within SM_b20588at 1603.423 kb on + strand, within SM_b20588at 1603.424 kb on - strand, within SM_b20588at 1603.424 kb on - strand, within SM_b20588at 1603.424 kb on - strand, within SM_b20588at 1603.424 kb on - strand, within SM_b20588at 1603.424 kb on - strand, within SM_b20588at 1603.470 kb on + strand, within SM_b20588at 1603.545 kb on - strand, within SM_b20588at 1603.563 kb on + strand, within SM_b20588at 1603.564 kb on - strand, within SM_b20588at 1604.009 kb on + strandat 1604.011 kb on + strandat 1604.011 kb on + strandat 1604.011 kb on + strandat 1604.012 kb on - strandat 1604.012 kb on - strandat 1604.012 kb on - strandat 1604.021 kb on + strandat 1604.021 kb on + strandat 1604.023 kb on + strandat 1604.023 kb on + strandat 1604.024 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine (N)
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1,601,802 - SM_b20586 0.46 -2.2
1,601,871 - SM_b20586 0.55 +0.2
1,601,942 + SM_b20586 0.65 +1.0
1,601,943 - SM_b20586 0.65 +1.1
1,601,943 - SM_b20586 0.65 +0.6
1,601,955 + SM_b20586 0.67 -0.3
1,601,981 + SM_b20586 0.70 -0.6
1,601,982 - SM_b20586 0.70 +0.2
1,601,982 - SM_b20586 0.70 +0.8
1,601,982 - SM_b20586 0.70 +1.6
1,602,211 - +1.1
1,602,307 + +0.7
1,602,307 + -1.4
1,602,370 - -0.8
1,602,370 - -2.2
1,602,394 + -0.7
1,602,432 - SM_b20587 0.11 +0.6
1,602,506 + SM_b20587 0.20 +0.2
1,602,507 - SM_b20587 0.20 +0.2
1,602,668 + SM_b20587 0.38 -0.1
1,602,669 - SM_b20587 0.38 -1.8
1,602,714 - SM_b20587 0.44 -0.4
1,602,733 + SM_b20587 0.46 -1.1
1,602,733 + SM_b20587 0.46 +0.2
1,602,748 + SM_b20587 0.48 -1.3
1,603,034 + SM_b20587 0.81 -0.8
1,603,035 - SM_b20587 0.81 +0.0
1,603,046 + SM_b20587 0.82 -1.3
1,603,046 + SM_b20587 0.82 -1.0
1,603,047 - SM_b20587 0.82 -0.9
1,603,049 + SM_b20587 0.83 +0.8
1,603,050 - SM_b20587 0.83 +0.5
1,603,070 + SM_b20587 0.85 -0.8
1,603,071 - SM_b20587 0.85 +0.2
1,603,071 - SM_b20587 0.85 +0.6
1,603,071 - SM_b20587 0.85 +0.2
1,603,071 - SM_b20587 0.85 +2.4
1,603,359 + SM_b20588 0.19 -1.4
1,603,359 + SM_b20588 0.19 -0.5
1,603,360 - SM_b20588 0.19 -1.9
1,603,423 + SM_b20588 0.27 +1.0
1,603,424 - SM_b20588 0.27 -0.4
1,603,424 - SM_b20588 0.27 -0.1
1,603,424 - SM_b20588 0.27 +1.1
1,603,424 - SM_b20588 0.27 +1.1
1,603,424 - SM_b20588 0.27 -0.6
1,603,470 + SM_b20588 0.33 -0.6
1,603,545 - SM_b20588 0.42 +0.5
1,603,563 + SM_b20588 0.45 -0.0
1,603,564 - SM_b20588 0.45 -0.1
1,604,009 + +3.6
1,604,011 + +0.4
1,604,011 + +0.5
1,604,011 + +2.0
1,604,012 - +0.2
1,604,012 - -2.9
1,604,012 - -2.8
1,604,021 + -2.6
1,604,021 + -0.2
1,604,023 + +1.2
1,604,023 + -0.8
1,604,024 - -1.4

Or see this region's nucleotide sequence