Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1845

Experiment: nitrite 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 10 mM
2,117,295	+		Pf1N1B4_1844	0.52	-1.3
2,117,296	-		Pf1N1B4_1844	0.52	+1.5
2,117,296	-		Pf1N1B4_1844	0.52	-1.3
2,117,350	-		Pf1N1B4_1844	0.55	+0.2
2,117,460	+		Pf1N1B4_1844	0.60	+0.4
2,117,461	-		Pf1N1B4_1844	0.60	+0.1
2,117,790	+		Pf1N1B4_1844	0.76	+0.4
2,117,790	+		Pf1N1B4_1844	0.76	-0.1
2,117,994	+		Pf1N1B4_1844	0.86	-0.1
2,117,994	+		Pf1N1B4_1844	0.86	+0.2
2,117,994	+		Pf1N1B4_1844	0.86	-0.1
2,117,995	-				+0.5
2,117,995	-		Pf1N1B4_1844	0.86	-1.3
2,117,995	-		Pf1N1B4_1844	0.86	-1.8
2,118,051	+		Pf1N1B4_1844	0.89	+0.9
2,118,052	-		Pf1N1B4_1844	0.89	-0.5
2,118,054	+		Pf1N1B4_1844	0.89	-0.5
2,118,054	+		Pf1N1B4_1844	0.89	+0.5
2,118,054	+		Pf1N1B4_1844	0.89	-0.7
2,118,054	+		Pf1N1B4_1844	0.89	-2.2
2,118,054	+		Pf1N1B4_1844	0.89	-0.1
2,118,054	+		Pf1N1B4_1844	0.89	-0.7
2,118,054	+		Pf1N1B4_1844	0.89	+0.0
2,118,054	+		Pf1N1B4_1844	0.89	-0.2
2,118,054	+		Pf1N1B4_1844	0.89	-1.0
2,118,055	-		Pf1N1B4_1844	0.89	+0.2
2,118,055	-		Pf1N1B4_1844	0.89	-1.5
2,118,055	-		Pf1N1B4_1844	0.89	-0.3
2,118,055	-		Pf1N1B4_1844	0.89	+0.5
2,118,055	-		Pf1N1B4_1844	0.89	-0.1
2,118,055	-		Pf1N1B4_1844	0.89	+0.9
2,118,055	-		Pf1N1B4_1844	0.89	+0.5
2,118,055	-		Pf1N1B4_1844	0.89	-0.5
2,118,060	+		Pf1N1B4_1844	0.89	-0.4
2,118,060	+		Pf1N1B4_1844	0.89	+0.7
2,118,060	+		Pf1N1B4_1844	0.89	-1.1
2,118,060	+		Pf1N1B4_1844	0.89	+1.5
2,118,060	+		Pf1N1B4_1844	0.89	-1.1
2,118,060	+		Pf1N1B4_1844	0.89	-1.5
2,118,060	+				+0.5
2,118,060	+		Pf1N1B4_1844	0.89	-0.1
2,118,060	+		Pf1N1B4_1844	0.89	-0.1
2,118,060	+		Pf1N1B4_1844	0.89	-2.1
2,118,061	-		Pf1N1B4_1844	0.90	-1.3
2,118,061	-		Pf1N1B4_1844	0.90	-0.5
2,118,061	-		Pf1N1B4_1844	0.90	+0.2
2,118,061	-		Pf1N1B4_1844	0.90	-0.1
2,118,061	-		Pf1N1B4_1844	0.90	-1.5
2,118,061	-		Pf1N1B4_1844	0.90	-0.5
2,118,061	-		Pf1N1B4_1844	0.90	-2.3
2,118,061	-		Pf1N1B4_1844	0.90	-3.6
2,118,061	-		Pf1N1B4_1844	0.90	+0.1
2,118,061	-		Pf1N1B4_1844	0.90	+0.3
2,118,061	-		Pf1N1B4_1844	0.90	-0.2
2,118,061	-		Pf1N1B4_1844	0.90	-0.6
2,118,062	+		Pf1N1B4_1844	0.90	+0.1
2,118,062	+		Pf1N1B4_1844	0.90	+0.3
2,118,062	+		Pf1N1B4_1844	0.90	-1.1
2,118,062	+		Pf1N1B4_1844	0.90	-0.2
2,118,062	+		Pf1N1B4_1844	0.90	+1.0
2,118,062	+		Pf1N1B4_1844	0.90	-0.8
2,118,062	+		Pf1N1B4_1844	0.90	-0.3
2,118,062	+		Pf1N1B4_1844	0.90	-1.1
2,118,062	+		Pf1N1B4_1844	0.90	-1.0
2,118,062	+		Pf1N1B4_1844	0.90	-0.8
2,118,062	+		Pf1N1B4_1844	0.90	+0.2
2,118,062	+		Pf1N1B4_1844	0.90	+0.5
2,118,062	+		Pf1N1B4_1844	0.90	+0.9
2,118,062	+		Pf1N1B4_1844	0.90	+0.1
2,118,062	+		Pf1N1B4_1844	0.90	-0.8
2,118,062	+		Pf1N1B4_1844	0.90	-1.8
2,118,062	+		Pf1N1B4_1844	0.90	-1.6
2,118,062	+		Pf1N1B4_1844	0.90	-1.2
2,118,062	+		Pf1N1B4_1844	0.90	+1.5
2,118,063	-		Pf1N1B4_1844	0.90	-0.5
2,118,063	-		Pf1N1B4_1844	0.90	-1.7
2,118,063	-		Pf1N1B4_1844	0.90	-1.1
2,118,063	-		Pf1N1B4_1844	0.90	+1.2
2,118,063	-				-0.8
2,118,063	-		Pf1N1B4_1844	0.90	+0.8
2,118,063	-		Pf1N1B4_1844	0.90	+1.8
2,118,063	-		Pf1N1B4_1844	0.90	+0.5
2,118,063	-		Pf1N1B4_1844	0.90	+0.5
2,118,063	-		Pf1N1B4_1844	0.90	-1.2
2,118,063	-		Pf1N1B4_1844	0.90	+0.9
2,118,063	-		Pf1N1B4_1844	0.90	+0.9
2,118,063	-		Pf1N1B4_1844	0.90	-1.1
2,118,063	-				+1.1
2,118,063	-		Pf1N1B4_1844	0.90	-2.3
2,118,063	-		Pf1N1B4_1844	0.90	-0.6
2,118,063	-		Pf1N1B4_1844	0.90	-1.1
2,118,063	-		Pf1N1B4_1844	0.90	-0.1
2,118,063	-		Pf1N1B4_1844	0.90	+0.2
2,118,063	-		Pf1N1B4_1844	0.90	-0.1
2,118,063	-		Pf1N1B4_1844	0.90	+1.5
2,118,063	-		Pf1N1B4_1844	0.90	-0.1
2,118,063	-		Pf1N1B4_1844	0.90	-0.8
2,118,063	-		Pf1N1B4_1844	0.90	-1.8
2,118,063	-		Pf1N1B4_1844	0.90	-0.7
2,118,063	-		Pf1N1B4_1844	0.90	-1.3
2,118,063	-		Pf1N1B4_1844	0.90	-0.4
2,118,076	+				-0.2
2,118,076	+				+0.2
2,118,076	+				+0.5
2,118,076	+				+1.0
2,118,077	-				-0.7
2,118,077	-				+0.5
2,118,077	-				-0.1
2,118,077	-				-0.7
2,118,077	-				+0.1
2,118,077	-				+0.3
2,118,118	+				-0.7
2,118,118	+				+1.2
2,118,118	+				-0.1
2,118,119	-				+0.0
2,118,308	-		Pf1N1B4_1845	0.12	-2.8
2,118,308	-		Pf1N1B4_1845	0.12	-2.1
2,118,466	+		Pf1N1B4_1845	0.67	-0.7
2,118,466	+		Pf1N1B4_1845	0.67	-2.3
2,118,467	-		Pf1N1B4_1845	0.68	-1.3
2,118,467	-		Pf1N1B4_1845	0.68	-0.4
2,118,720	+		Pf1N1B4_1846	0.24	+0.1
2,118,720	+		Pf1N1B4_1846	0.24	+1.5
2,118,720	+		Pf1N1B4_1846	0.24	-0.1
2,118,721	-		Pf1N1B4_1846	0.24	-0.1
2,118,793	+		Pf1N1B4_1846	0.39	-1.3
2,118,820	-		Pf1N1B4_1846	0.44	-0.8
2,118,868	+		Pf1N1B4_1846	0.54	-1.1
2,118,869	-		Pf1N1B4_1846	0.54	-1.7
2,118,869	-		Pf1N1B4_1846	0.54	+2.1
2,118,920	+		Pf1N1B4_1846	0.65	-0.9
2,118,920	+		Pf1N1B4_1846	0.65	-0.6
2,118,920	+		Pf1N1B4_1846	0.65	+0.7
2,118,920	+		Pf1N1B4_1846	0.65	-0.6
2,118,921	-		Pf1N1B4_1846	0.65	+1.3
2,118,921	-		Pf1N1B4_1846	0.65	-0.5
2,118,921	-		Pf1N1B4_1846	0.65	+0.9
2,118,921	-		Pf1N1B4_1846	0.65	+0.6
2,118,921	-		Pf1N1B4_1846	0.65	-1.1
2,118,921	-		Pf1N1B4_1846	0.65	-0.4
2,118,921	-		Pf1N1B4_1846	0.65	+0.3
2,118,921	-		Pf1N1B4_1846	0.65	-0.5
2,118,921	-		Pf1N1B4_1846	0.65	-0.7
2,118,921	-		Pf1N1B4_1846	0.65	+0.8
2,118,962	+		Pf1N1B4_1846	0.73	-1.9
2,118,962	+		Pf1N1B4_1846	0.73	+0.6
2,118,962	+		Pf1N1B4_1846	0.73	-1.4
2,118,962	+		Pf1N1B4_1846	0.73	-1.2
2,118,962	+		Pf1N1B4_1846	0.73	+1.5
2,118,963	-		Pf1N1B4_1846	0.73	+0.9
2,118,963	-		Pf1N1B4_1846	0.73	-0.5
2,118,963	-		Pf1N1B4_1846	0.73	+0.2
2,118,963	-		Pf1N1B4_1846	0.73	+0.5
2,118,963	-		Pf1N1B4_1846	0.73	-0.8
2,118,963	-		Pf1N1B4_1846	0.73	-0.2
2,118,963	-		Pf1N1B4_1846	0.73	-1.3
2,118,963	-		Pf1N1B4_1846	0.73	+0.2
2,118,963	-		Pf1N1B4_1846	0.73	+0.3
2,118,963	-		Pf1N1B4_1846	0.73	-1.1
2,118,963	-		Pf1N1B4_1846	0.73	+0.2
2,118,963	-		Pf1N1B4_1846	0.73	+0.2
2,119,022	+		Pf1N1B4_1846	0.85	+0.9
2,119,022	+		Pf1N1B4_1846	0.85	-1.2
2,119,022	+		Pf1N1B4_1846	0.85	-0.1
2,119,226	+				-0.5
2,119,227	-				-0.3
2,119,227	-				-0.2
2,119,227	-				+0.4
2,119,228	+				+1.2
2,119,228	+				-0.3
2,119,228	+				+1.7
2,119,228	+				-0.8
2,119,228	+				-0.5
2,119,228	+				-1.3
2,119,228	+				-2.8
2,119,228	+				+0.3
2,119,228	+				+0.8
2,119,228	+				-0.8
2,119,228	+				+0.5
2,119,228	+				+0.9
2,119,228	+				+0.5
2,119,228	+				+0.6
2,119,228	+				-0.8
2,119,228	+				-0.1
2,119,228	+				-0.8
2,119,228	+				+0.2
2,119,228	+				-0.9
2,119,229	-				+1.1
2,119,229	-				-1.1
2,119,229	-				-0.1
2,119,229	-				-0.8
2,119,229	-				-2.4
2,119,229	-				+0.2
2,119,229	-				-0.3
2,119,229	-				-0.1
2,119,229	-				-0.0
2,119,230	+				-0.8
2,119,230	+				-1.8
2,119,230	+				+1.0
2,119,231	-				+0.3
2,119,397	+				-0.8
2,119,398	-				+1.5
2,119,496	-				+0.5
2,119,511	+				-0.5
2,119,512	-				-0.5
2,119,524	+				-0.3
2,119,525	-		Pf1N1B4_1847	0.10	+0.2
2,119,525	-		Pf1N1B4_1847	0.10	-1.2