Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1841

Experiment: nitrite 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrite 10 mM
2,112,797	+		Pf1N1B4_1839	0.13	-0.4
2,112,797	+		Pf1N1B4_1839	0.13	+0.5
2,112,797	+		Pf1N1B4_1839	0.13	-2.0
2,112,797	+		Pf1N1B4_1839	0.13	-0.3
2,112,798	-		Pf1N1B4_1839	0.13	-0.5
2,112,798	-		Pf1N1B4_1839	0.13	-1.1
2,112,798	-		Pf1N1B4_1839	0.13	-1.7
2,112,798	-		Pf1N1B4_1839	0.13	-0.1
2,112,823	+		Pf1N1B4_1839	0.19	-0.3
2,112,823	+		Pf1N1B4_1839	0.19	+0.7
2,112,824	-		Pf1N1B4_1839	0.20	-1.3
2,112,825	+		Pf1N1B4_1839	0.20	+0.1
2,112,825	+		Pf1N1B4_1839	0.20	-0.3
2,112,825	+		Pf1N1B4_1839	0.20	-0.5
2,112,825	+		Pf1N1B4_1839	0.20	-0.1
2,112,825	+		Pf1N1B4_1839	0.20	+0.5
2,112,825	+		Pf1N1B4_1839	0.20	-0.4
2,112,825	+		Pf1N1B4_1839	0.20	-1.0
2,112,825	+		Pf1N1B4_1839	0.20	+1.5
2,112,826	-		Pf1N1B4_1839	0.20	-0.1
2,112,826	-		Pf1N1B4_1839	0.20	+0.7
2,112,826	-		Pf1N1B4_1839	0.20	+1.5
2,112,826	-		Pf1N1B4_1839	0.20	+0.4
2,112,826	-		Pf1N1B4_1839	0.20	+0.1
2,112,845	+		Pf1N1B4_1839	0.25	+0.5
2,112,846	-		Pf1N1B4_1839	0.25	+1.7
2,112,872	+		Pf1N1B4_1839	0.31	+0.7
2,112,872	+		Pf1N1B4_1839	0.31	+0.5
2,112,872	+		Pf1N1B4_1839	0.31	+0.5
2,112,873	-		Pf1N1B4_1839	0.31	-0.2
2,112,873	-		Pf1N1B4_1839	0.31	+0.4
2,112,873	-		Pf1N1B4_1839	0.31	-0.0
2,112,888	-		Pf1N1B4_1839	0.35	-1.1
2,112,888	-		Pf1N1B4_1839	0.35	-0.6
2,112,955	+		Pf1N1B4_1839	0.51	+0.9
2,112,956	-		Pf1N1B4_1839	0.51	-0.1
2,112,956	-		Pf1N1B4_1839	0.51	+0.2
2,112,956	-		Pf1N1B4_1839	0.51	-0.5
2,112,961	+		Pf1N1B4_1839	0.52	+0.1
2,112,961	+		Pf1N1B4_1839	0.52	-0.3
2,112,961	+		Pf1N1B4_1839	0.52	-1.0
2,112,961	+		Pf1N1B4_1839	0.52	-0.5
2,112,961	+		Pf1N1B4_1839	0.52	+0.2
2,112,961	+		Pf1N1B4_1839	0.52	+1.5
2,112,962	-		Pf1N1B4_1839	0.52	+2.2
2,112,962	-		Pf1N1B4_1839	0.52	+0.5
2,112,962	-		Pf1N1B4_1839	0.52	-1.3
2,112,962	-		Pf1N1B4_1839	0.52	-0.7
2,112,962	-		Pf1N1B4_1839	0.52	-0.4
2,112,962	-		Pf1N1B4_1839	0.52	+0.5
2,112,992	+		Pf1N1B4_1839	0.60	+0.8
2,112,992	+		Pf1N1B4_1839	0.60	+0.1
2,112,993	-		Pf1N1B4_1839	0.60	+0.4
2,112,993	-		Pf1N1B4_1839	0.60	-1.2
2,112,993	-		Pf1N1B4_1839	0.60	+2.5
2,112,993	-		Pf1N1B4_1839	0.60	-1.7
2,113,183	+				-0.4
2,113,207	+				+0.5
2,113,207	+				-1.5
2,113,207	+				+1.9
2,113,207	+				-0.9
2,113,208	+				+0.4
2,113,208	-				+0.2
2,113,208	-				+0.1
2,113,260	+		Pf1N1B4_1840	0.14	-1.3
2,113,260	+		Pf1N1B4_1840	0.14	-1.2
2,113,261	-		Pf1N1B4_1840	0.14	-0.0
2,113,261	-		Pf1N1B4_1840	0.14	+0.5
2,113,261	-		Pf1N1B4_1840	0.14	-0.3
2,113,261	-		Pf1N1B4_1840	0.14	-0.5
2,113,261	-		Pf1N1B4_1840	0.14	-1.1
2,113,261	-		Pf1N1B4_1840	0.14	-1.3
2,113,288	+		Pf1N1B4_1840	0.21	-1.3
2,113,290	+		Pf1N1B4_1840	0.21	-0.1
2,113,290	+		Pf1N1B4_1840	0.21	-0.4
2,113,291	-		Pf1N1B4_1840	0.21	-0.2
2,113,291	-		Pf1N1B4_1840	0.21	-0.9
2,113,413	+		Pf1N1B4_1840	0.51	-1.4
2,113,414	-		Pf1N1B4_1840	0.51	-0.1
2,113,414	-		Pf1N1B4_1840	0.51	-1.0
2,113,414	-		Pf1N1B4_1840	0.51	+0.6
2,113,414	-		Pf1N1B4_1840	0.51	-0.9
2,113,445	+		Pf1N1B4_1840	0.58	+1.7
2,113,445	+		Pf1N1B4_1840	0.58	-1.0
2,113,446	-		Pf1N1B4_1840	0.59	-0.9
2,113,446	-		Pf1N1B4_1840	0.59	-3.1
2,113,455	+		Pf1N1B4_1840	0.61	+0.5
2,113,455	+		Pf1N1B4_1840	0.61	-0.5
2,113,456	-		Pf1N1B4_1840	0.61	+1.1
2,113,490	+		Pf1N1B4_1840	0.69	+0.3
2,113,491	-		Pf1N1B4_1840	0.69	+0.5
2,113,491	-		Pf1N1B4_1840	0.69	-0.9
2,113,558	+		Pf1N1B4_1840	0.85	-2.3
2,113,558	+		Pf1N1B4_1840	0.85	-0.1
2,113,559	-		Pf1N1B4_1840	0.86	-0.1
2,113,559	-		Pf1N1B4_1840	0.86	-1.0
2,113,559	-		Pf1N1B4_1840	0.86	-1.0
2,113,562	+		Pf1N1B4_1840	0.86	-1.9
2,113,562	+		Pf1N1B4_1840	0.86	+0.1
2,113,562	+		Pf1N1B4_1840	0.86	-0.3
2,113,563	-		Pf1N1B4_1840	0.87	+1.1
2,113,563	-		Pf1N1B4_1840	0.87	-0.9
2,113,563	-		Pf1N1B4_1840	0.87	-0.2
2,113,619	-				+0.2
2,113,642	-				+0.2
2,113,705	+				-0.1
2,113,705	+				+0.4
2,113,706	-				-0.1
2,113,706	-				-0.5
2,113,721	-				-1.3
2,113,754	-				-1.5
2,113,779	+				+0.7
2,113,779	+				-0.1
2,113,779	+				+0.2
2,113,779	+				-0.1
2,113,779	+				-0.3
2,113,779	+				-0.4
2,113,780	-				-0.5
2,113,780	-				-1.7
2,113,780	-				-0.9
2,113,780	-				-0.1
2,113,780	-				+0.9
2,113,780	-				+0.8
2,113,780	-				-1.3
2,113,780	-				+1.3
2,113,780	-				-0.3
2,113,782	+				+0.2
2,113,782	+				+0.1
2,113,782	+				-1.0
2,113,959	+		Pf1N1B4_1841	0.21	-1.2
2,113,959	+		Pf1N1B4_1841	0.21	-0.1
2,113,984	+		Pf1N1B4_1841	0.24	-2.0
2,113,984	+				-1.1
2,113,985	-		Pf1N1B4_1841	0.24	+0.5
2,113,985	-		Pf1N1B4_1841	0.24	-1.0
2,113,985	-		Pf1N1B4_1841	0.24	-0.6
2,113,985	-		Pf1N1B4_1841	0.24	-0.1
2,114,076	+		Pf1N1B4_1841	0.33	+0.1
2,114,076	+		Pf1N1B4_1841	0.33	+0.5
2,114,076	+		Pf1N1B4_1841	0.33	-1.3
2,114,076	+		Pf1N1B4_1841	0.33	-0.1
2,114,076	+		Pf1N1B4_1841	0.33	-1.1
2,114,077	-		Pf1N1B4_1841	0.33	+0.3
2,114,077	-		Pf1N1B4_1841	0.33	-0.1
2,114,077	-		Pf1N1B4_1841	0.33	+0.2
2,114,077	-		Pf1N1B4_1841	0.33	-0.4
2,114,077	-		Pf1N1B4_1841	0.33	+0.5
2,114,126	+		Pf1N1B4_1841	0.38	-0.1
2,114,126	+		Pf1N1B4_1841	0.38	-0.4
2,114,126	+		Pf1N1B4_1841	0.38	-0.5
2,114,127	-		Pf1N1B4_1841	0.38	+0.6
2,114,127	-		Pf1N1B4_1841	0.38	-1.3
2,114,127	-		Pf1N1B4_1841	0.38	-1.3
2,114,127	-		Pf1N1B4_1841	0.38	-0.5
2,114,157	+		Pf1N1B4_1841	0.41	-0.4
2,114,158	-		Pf1N1B4_1841	0.41	-0.7
2,114,158	-		Pf1N1B4_1841	0.41	-2.6
2,114,265	+		Pf1N1B4_1841	0.51	+0.7
2,114,265	+		Pf1N1B4_1841	0.51	-0.2
2,114,265	+				-0.9
2,114,265	+		Pf1N1B4_1841	0.51	-0.1
2,114,265	+		Pf1N1B4_1841	0.51	-1.1
2,114,265	+		Pf1N1B4_1841	0.51	-1.2
2,114,265	+		Pf1N1B4_1841	0.51	-0.3
2,114,265	+		Pf1N1B4_1841	0.51	+0.0
2,114,265	+		Pf1N1B4_1841	0.51	-1.4
2,114,265	+		Pf1N1B4_1841	0.51	+0.7
2,114,265	+		Pf1N1B4_1841	0.51	-1.5
2,114,265	+		Pf1N1B4_1841	0.51	-1.8
2,114,265	+		Pf1N1B4_1841	0.51	+0.5
2,114,265	+		Pf1N1B4_1841	0.51	+0.5
2,114,266	-		Pf1N1B4_1841	0.51	-1.0
2,114,266	-		Pf1N1B4_1841	0.51	-0.9
2,114,266	-		Pf1N1B4_1841	0.51	-0.9
2,114,266	-		Pf1N1B4_1841	0.51	-1.3
2,114,266	-		Pf1N1B4_1841	0.51	-0.1
2,114,266	-		Pf1N1B4_1841	0.51	-0.1
2,114,266	-		Pf1N1B4_1841	0.51	+0.5
2,114,440	-		Pf1N1B4_1841	0.68	+0.1
2,114,553	+		Pf1N1B4_1841	0.79	-1.5
2,114,554	-		Pf1N1B4_1841	0.79	-0.3
2,114,610	+		Pf1N1B4_1841	0.85	-0.7
2,114,610	+		Pf1N1B4_1841	0.85	-0.4
2,114,610	+		Pf1N1B4_1841	0.85	-0.9
2,114,610	+		Pf1N1B4_1841	0.85	-0.4
2,114,611	-		Pf1N1B4_1841	0.85	+0.7
2,114,611	-		Pf1N1B4_1841	0.85	-0.6
2,114,611	-				+0.5
2,114,611	-		Pf1N1B4_1841	0.85	-0.1
2,114,611	-		Pf1N1B4_1841	0.85	-0.9
2,114,611	-		Pf1N1B4_1841	0.85	-0.4
2,114,611	-		Pf1N1B4_1841	0.85	-0.5
2,114,611	-				+1.1
2,114,611	-		Pf1N1B4_1841	0.85	-1.7
2,114,611	-		Pf1N1B4_1841	0.85	-1.1
2,114,611	-		Pf1N1B4_1841	0.85	+2.3
2,114,641	+		Pf1N1B4_1841	0.88	-0.5
2,114,676	+				-0.9
2,114,676	+				+0.2
2,114,677	-				-0.5
2,114,720	+				-0.9
2,114,721	-				+1.2
2,114,803	+				+0.2
2,114,803	+				-0.5
2,114,803	+				-0.1
2,114,803	+				+0.5
2,114,804	-				-0.4
2,114,804	-				-0.8
2,114,804	-				+0.5
2,114,804	-				+1.3
2,114,804	-				-0.2
2,114,804	-				-0.7
2,114,813	+				-0.1
2,114,814	-				-0.6
2,114,838	+				-0.6
2,114,838	+				-0.8
2,114,838	+				-1.1
2,114,838	+				-1.1
2,114,838	+				+0.4
2,114,838	+				+0.5
2,114,838	+				-0.4
2,114,839	-				+0.2
2,114,839	-				-0.9
2,114,839	-				-1.8
2,114,839	-				+0.5
2,114,839	-				+1.1
2,114,839	-				-0.8
2,114,839	-				-0.6
2,114,839	-				-1.3
2,114,839	-				+0.4
2,114,839	-				+1.5
2,114,839	-				+0.8
2,114,882	+				-0.5
2,114,883	-				-0.3
2,115,030	+		Pf1N1B4_1842	0.23	+0.4
2,115,031	-		Pf1N1B4_1842	0.23	-0.1
2,115,031	-		Pf1N1B4_1842	0.23	-1.1
2,115,051	+		Pf1N1B4_1842	0.26	+0.9
2,115,051	+		Pf1N1B4_1842	0.26	-0.7
2,115,051	+		Pf1N1B4_1842	0.26	-1.3
2,115,052	-		Pf1N1B4_1842	0.26	-0.6
2,115,052	-		Pf1N1B4_1842	0.26	+0.9
2,115,137	+		Pf1N1B4_1842	0.39	+1.9
2,115,138	-		Pf1N1B4_1842	0.39	+0.5
2,115,218	+		Pf1N1B4_1842	0.52	-0.2
2,115,218	+		Pf1N1B4_1842	0.52	-1.1
2,115,218	+		Pf1N1B4_1842	0.52	+0.1
2,115,218	+		Pf1N1B4_1842	0.52	+1.5
2,115,218	+		Pf1N1B4_1842	0.52	-1.1
2,115,218	+		Pf1N1B4_1842	0.52	-1.1
2,115,218	+		Pf1N1B4_1842	0.52	-0.3
2,115,218	+		Pf1N1B4_1842	0.52	-1.3
2,115,218	+		Pf1N1B4_1842	0.52	+1.5
2,115,218	+		Pf1N1B4_1842	0.52	-0.1
2,115,218	+		Pf1N1B4_1842	0.52	-0.3
2,115,218	+		Pf1N1B4_1842	0.52	-0.3
2,115,219	-		Pf1N1B4_1842	0.52	+0.3
2,115,219	-		Pf1N1B4_1842	0.52	-1.8
2,115,219	-		Pf1N1B4_1842	0.52	-1.1
2,115,219	-		Pf1N1B4_1842	0.52	+0.1
2,115,219	-		Pf1N1B4_1842	0.52	-0.6
2,115,219	-		Pf1N1B4_1842	0.52	+0.3
2,115,219	-		Pf1N1B4_1842	0.52	-0.4
2,115,219	-		Pf1N1B4_1842	0.52	-3.0
2,115,468	+				-0.8
2,115,514	+				+0.5
2,115,514	+				+1.5
2,115,515	-				-1.4
2,115,515	-				-2.2
2,115,524	+				+1.2
2,115,548	+				+1.5
2,115,578	+				+0.7
2,115,579	-				-1.8
2,115,579	-				-1.1
2,115,626	+				-0.4
2,115,626	+				+1.5
2,115,626	+				+0.1
2,115,627	-				-0.5
2,115,627	-				+0.6
2,115,627	-				-0.7
2,115,627	-				-0.2
2,115,627	-				+0.5
2,115,627	-				+0.1
2,115,641	+		Pf1N1B4_1843	0.12	+0.2
2,115,641	+		Pf1N1B4_1843	0.12	-1.1
2,115,641	+		Pf1N1B4_1843	0.12	-1.1
2,115,642	-		Pf1N1B4_1843	0.12	-0.3
2,115,642	-		Pf1N1B4_1843	0.12	+1.3
2,115,642	-		Pf1N1B4_1843	0.12	-1.5
2,115,642	-		Pf1N1B4_1843	0.12	+1.1
2,115,704	+		Pf1N1B4_1843	0.23	+0.1
2,115,704	+		Pf1N1B4_1843	0.23	-0.9
2,115,704	+		Pf1N1B4_1843	0.23	-0.6
2,115,704	+		Pf1N1B4_1843	0.23	-1.6
2,115,704	+		Pf1N1B4_1843	0.23	-1.1
2,115,704	+		Pf1N1B4_1843	0.23	-0.0
2,115,704	+		Pf1N1B4_1843	0.23	-0.0
2,115,704	+		Pf1N1B4_1843	0.23	+0.9
2,115,705	-		Pf1N1B4_1843	0.23	+0.3
2,115,705	-		Pf1N1B4_1843	0.23	-0.3
2,115,705	-		Pf1N1B4_1843	0.23	+1.1