Experiment: Collected from freezer stock
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04720 and MMP_RS04725 are separated by 38 nucleotides MMP_RS04725 and MMP_RS04730 are separated by 43 nucleotides MMP_RS04730 and MMP_RS04735 are separated by 75 nucleotides MMP_RS04735 and MMP_RS04740 are separated by 41 nucleotides MMP_RS04740 and MMP_RS04745 are separated by 18 nucleotides
MMP_RS04720: MMP_RS04720 - DedA family protein, at 901,906 to 902,388
_RS04720
MMP_RS04725: MMP_RS04725 - hypothetical protein, at 902,427 to 902,855
_RS04725
MMP_RS04730: MMP_RS04730 - flavodoxin family protein, at 902,899 to 903,480
_RS04730
MMP_RS04735: MMP_RS04735 - tautomerase family protein, at 903,556 to 903,750
_RS04735
MMP_RS04740: MMP_RS04740 - DUF473 domain-containing protein, at 903,792 to 904,169
_RS04740
MMP_RS04745: MMP_RS04745 - proteasome assembly chaperone family protein, at 904,188 to 904,895
_RS04745
Position (kb) 902
903
904 Strain fitness (log2 ratio) -1
0
1
2 at 901.931 kb on + strand at 902.011 kb on + strand, within MMP_RS04720 at 902.012 kb on - strand, within MMP_RS04720 at 902.016 kb on - strand, within MMP_RS04720 at 902.017 kb on + strand, within MMP_RS04720 at 902.017 kb on + strand, within MMP_RS04720 at 902.337 kb on + strand, within MMP_RS04720 at 902.341 kb on - strand at 902.366 kb on - strand at 902.391 kb on - strand at 902.426 kb on + strand at 902.482 kb on + strand, within MMP_RS04725 at 902.482 kb on + strand, within MMP_RS04725 at 902.482 kb on + strand, within MMP_RS04725 at 902.552 kb on - strand, within MMP_RS04725 at 902.557 kb on + strand, within MMP_RS04725 at 902.575 kb on - strand, within MMP_RS04725 at 902.575 kb on - strand, within MMP_RS04725 at 902.575 kb on - strand, within MMP_RS04725 at 902.643 kb on - strand, within MMP_RS04725 at 902.669 kb on - strand, within MMP_RS04725 at 902.691 kb on - strand, within MMP_RS04725 at 902.692 kb on + strand, within MMP_RS04725 at 902.696 kb on - strand, within MMP_RS04725 at 902.696 kb on - strand, within MMP_RS04725 at 902.696 kb on - strand, within MMP_RS04725 at 902.742 kb on + strand, within MMP_RS04725 at 902.758 kb on + strand, within MMP_RS04725 at 902.758 kb on + strand, within MMP_RS04725 at 902.817 kb on - strand at 902.873 kb on - strand at 902.873 kb on - strand at 902.897 kb on - strand at 902.897 kb on - strand at 902.897 kb on - strand at 902.898 kb on + strand at 902.898 kb on + strand at 902.900 kb on - strand at 902.902 kb on - strand at 902.903 kb on + strand at 902.903 kb on + strand at 902.943 kb on - strand at 903.018 kb on + strand, within MMP_RS04730 at 903.088 kb on - strand, within MMP_RS04730 at 903.094 kb on + strand, within MMP_RS04730 at 903.160 kb on + strand, within MMP_RS04730 at 903.171 kb on - strand, within MMP_RS04730 at 903.171 kb on - strand, within MMP_RS04730 at 903.228 kb on + strand, within MMP_RS04730 at 903.243 kb on - strand, within MMP_RS04730 at 903.244 kb on + strand, within MMP_RS04730 at 903.247 kb on - strand, within MMP_RS04730 at 903.248 kb on + strand, within MMP_RS04730 at 903.248 kb on + strand, within MMP_RS04730 at 903.248 kb on + strand, within MMP_RS04730 at 903.248 kb on + strand, within MMP_RS04730 at 903.250 kb on + strand, within MMP_RS04730 at 903.295 kb on - strand, within MMP_RS04730 at 903.301 kb on + strand, within MMP_RS04730 at 903.422 kb on + strand at 903.501 kb on - strand at 903.501 kb on - strand at 903.501 kb on - strand at 903.502 kb on + strand at 903.502 kb on + strand at 903.502 kb on + strand at 903.542 kb on - strand at 903.542 kb on - strand at 903.578 kb on + strand, within MMP_RS04735 at 903.632 kb on + strand, within MMP_RS04735 at 903.661 kb on - strand, within MMP_RS04735 at 903.661 kb on - strand, within MMP_RS04735 at 903.662 kb on + strand, within MMP_RS04735 at 903.793 kb on - strand at 903.794 kb on + strand at 903.804 kb on - strand at 903.909 kb on - strand, within MMP_RS04740 at 903.919 kb on + strand, within MMP_RS04740 at 903.954 kb on + strand, within MMP_RS04740 at 903.958 kb on + strand, within MMP_RS04740 at 903.960 kb on + strand, within MMP_RS04740 at 904.189 kb on - strand at 904.189 kb on - strand at 904.194 kb on + strand at 904.194 kb on + strand at 904.194 kb on + strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.195 kb on - strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.196 kb on + strand at 904.199 kb on - strand at 904.200 kb on + strand at 904.392 kb on - strand, within MMP_RS04745
Per-strain Table
Position Strand Gene LocusTag Fraction Collected from freezer stock remove 901,931 + +2.1 902,011 + MMP_RS04720 0.22 -0.0 902,012 - MMP_RS04720 0.22 +0.3 902,016 - MMP_RS04720 0.23 -0.3 902,017 + MMP_RS04720 0.23 +0.1 902,017 + MMP_RS04720 0.23 +0.9 902,337 + MMP_RS04720 0.89 +1.3 902,341 - +0.1 902,366 - +0.2 902,391 - -0.5 902,426 + +0.0 902,482 + MMP_RS04725 0.13 -0.4 902,482 + MMP_RS04725 0.13 -0.2 902,482 + MMP_RS04725 0.13 +0.2 902,552 - MMP_RS04725 0.29 -0.2 902,557 + MMP_RS04725 0.30 -0.1 902,575 - MMP_RS04725 0.34 -0.3 902,575 - MMP_RS04725 0.34 +0.8 902,575 - MMP_RS04725 0.34 -0.2 902,643 - MMP_RS04725 0.50 +0.2 902,669 - MMP_RS04725 0.56 -0.3 902,691 - MMP_RS04725 0.62 +0.1 902,692 + MMP_RS04725 0.62 +0.8 902,696 - MMP_RS04725 0.63 +1.3 902,696 - MMP_RS04725 0.63 +0.8 902,696 - MMP_RS04725 0.63 +0.7 902,742 + MMP_RS04725 0.73 -0.3 902,758 + MMP_RS04725 0.77 +1.3 902,758 + MMP_RS04725 0.77 -0.2 902,817 - -0.2 902,873 - -0.1 902,873 - -0.5 902,897 - +0.2 902,897 - +0.0 902,897 - +0.4 902,898 + -0.2 902,898 + +0.8 902,900 - -0.3 902,902 - +0.2 902,903 + -0.4 902,903 + -0.3 902,943 - +0.6 903,018 + MMP_RS04730 0.20 -0.2 903,088 - MMP_RS04730 0.32 -0.1 903,094 + MMP_RS04730 0.34 -0.2 903,160 + MMP_RS04730 0.45 +0.7 903,171 - MMP_RS04730 0.47 -0.2 903,171 - MMP_RS04730 0.47 -0.0 903,228 + MMP_RS04730 0.57 -0.0 903,243 - MMP_RS04730 0.59 -0.3 903,244 + MMP_RS04730 0.59 +0.1 903,247 - MMP_RS04730 0.60 +0.2 903,248 + MMP_RS04730 0.60 -0.0 903,248 + MMP_RS04730 0.60 -0.0 903,248 + MMP_RS04730 0.60 -0.3 903,248 + MMP_RS04730 0.60 -0.5 903,250 + MMP_RS04730 0.60 -1.0 903,295 - MMP_RS04730 0.68 -0.3 903,301 + MMP_RS04730 0.69 -0.1 903,422 + +0.6 903,501 - +0.5 903,501 - -0.4 903,501 - +0.5 903,502 + -0.2 903,502 + -0.4 903,502 + -0.2 903,542 - +0.6 903,542 - +0.2 903,578 + MMP_RS04735 0.11 -0.1 903,632 + MMP_RS04735 0.39 +0.6 903,661 - MMP_RS04735 0.54 -0.3 903,661 - MMP_RS04735 0.54 -0.2 903,662 + MMP_RS04735 0.54 +0.1 903,793 - +0.0 903,794 + -0.7 903,804 - +0.2 903,909 - MMP_RS04740 0.31 -0.3 903,919 + MMP_RS04740 0.34 -0.0 903,954 + MMP_RS04740 0.43 -0.1 903,958 + MMP_RS04740 0.44 -0.3 903,960 + MMP_RS04740 0.44 +0.3 904,189 - -0.4 904,189 - -0.3 904,194 + +0.5 904,194 + -0.4 904,194 + +0.7 904,195 - -0.2 904,195 - -0.3 904,195 - +0.1 904,195 - +0.6 904,195 - -0.3 904,195 - -0.2 904,195 - +0.3 904,195 - +0.6 904,195 - +0.4 904,195 - -0.0 904,195 - +0.4 904,196 + -0.4 904,196 + -0.3 904,196 + +1.1 904,196 + +0.2 904,196 + +0.0 904,196 + -0.5 904,196 + +0.2 904,196 + +1.0 904,196 + +0.0 904,199 - -0.1 904,200 + +0.9 904,392 - MMP_RS04745 0.29 -0.4
Or see this region's nucleotide sequence