Strain Fitness in Methanococcus maripaludis S2 around MMP_RS02880

Experiment: Collected from freezer stock

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS02870 and MMP_RS02875 are separated by 33 nucleotidesMMP_RS02875 and MMP_RS02880 are separated by 14 nucleotidesMMP_RS02880 and MMP_RS02885 are separated by 26 nucleotides MMP_RS02870: MMP_RS02870 - hypothetical protein, at 546,548 to 547,150 _RS02870 MMP_RS02875: MMP_RS02875 - chorismate pyruvate-lyase family protein, at 547,184 to 547,699 _RS02875 MMP_RS02880: MMP_RS02880 - AmmeMemoRadiSam system radical SAM enzyme, at 547,714 to 548,724 _RS02880 MMP_RS02885: MMP_RS02885 - molybdopterin biosynthesis protein, at 548,751 to 550,601 _RS02885 Position (kb) 547 548 549Strain fitness (log2 ratio) -1 0 1 2at 546.784 kb on - strand, within MMP_RS02870at 546.792 kb on + strand, within MMP_RS02870at 546.865 kb on - strand, within MMP_RS02870at 547.066 kb on + strand, within MMP_RS02870at 547.074 kb on - strand, within MMP_RS02870at 547.075 kb on + strand, within MMP_RS02870at 547.095 kb on - strandat 547.107 kb on - strandat 547.123 kb on + strandat 547.123 kb on + strandat 547.161 kb on + strandat 547.173 kb on - strandat 547.183 kb on - strandat 547.192 kb on - strandat 547.236 kb on - strand, within MMP_RS02875at 547.285 kb on - strand, within MMP_RS02875at 547.289 kb on + strand, within MMP_RS02875at 547.299 kb on - strand, within MMP_RS02875at 547.341 kb on + strand, within MMP_RS02875at 547.363 kb on + strand, within MMP_RS02875at 547.367 kb on - strand, within MMP_RS02875at 547.441 kb on + strand, within MMP_RS02875at 547.454 kb on + strand, within MMP_RS02875at 547.583 kb on + strand, within MMP_RS02875at 547.628 kb on - strand, within MMP_RS02875at 547.634 kb on + strand, within MMP_RS02875at 547.634 kb on + strand, within MMP_RS02875at 547.634 kb on + strand, within MMP_RS02875at 547.635 kb on - strand, within MMP_RS02875at 547.665 kb on - strandat 547.679 kb on + strandat 547.856 kb on - strand, within MMP_RS02880at 547.920 kb on - strand, within MMP_RS02880at 548.098 kb on - strand, within MMP_RS02880at 548.099 kb on + strand, within MMP_RS02880at 548.245 kb on + strand, within MMP_RS02880at 548.246 kb on - strand, within MMP_RS02880at 548.471 kb on + strand, within MMP_RS02880at 548.501 kb on - strand, within MMP_RS02880at 548.501 kb on - strand, within MMP_RS02880at 548.501 kb on - strand, within MMP_RS02880at 548.502 kb on + strand, within MMP_RS02880at 548.555 kb on - strand, within MMP_RS02880at 548.556 kb on + strand, within MMP_RS02880at 548.556 kb on + strand, within MMP_RS02880at 548.558 kb on + strand, within MMP_RS02880at 548.596 kb on - strand, within MMP_RS02880at 548.617 kb on + strand, within MMP_RS02880at 548.665 kb on + strandat 548.718 kb on + strandat 548.718 kb on + strandat 548.737 kb on - strandat 548.738 kb on + strandat 548.757 kb on - strandat 548.758 kb on + strandat 548.761 kb on - strandat 548.762 kb on + strandat 548.762 kb on + strandat 548.786 kb on - strandat 548.876 kb on + strandat 549.091 kb on - strand, within MMP_RS02885at 549.188 kb on + strand, within MMP_RS02885at 549.203 kb on - strand, within MMP_RS02885at 549.204 kb on + strand, within MMP_RS02885at 549.204 kb on + strand, within MMP_RS02885at 549.206 kb on + strand, within MMP_RS02885at 549.224 kb on - strand, within MMP_RS02885at 549.308 kb on + strand, within MMP_RS02885at 549.328 kb on - strand, within MMP_RS02885at 549.329 kb on + strand, within MMP_RS02885at 549.357 kb on + strand, within MMP_RS02885at 549.374 kb on - strand, within MMP_RS02885at 549.689 kb on + strand, within MMP_RS02885at 549.692 kb on + strand, within MMP_RS02885

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Per-strain Table

Position Strand Gene LocusTag Fraction Collected from freezer stock
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546,784 - MMP_RS02870 0.39 -0.3
546,792 + MMP_RS02870 0.40 -0.5
546,865 - MMP_RS02870 0.53 +0.3
547,066 + MMP_RS02870 0.86 +0.5
547,074 - MMP_RS02870 0.87 +0.8
547,075 + MMP_RS02870 0.87 -0.3
547,095 - -0.5
547,107 - +0.0
547,123 + -0.3
547,123 + -0.5
547,161 + -0.2
547,173 - +0.1
547,183 - +0.4
547,192 - -0.3
547,236 - MMP_RS02875 0.10 -0.5
547,285 - MMP_RS02875 0.20 +0.6
547,289 + MMP_RS02875 0.20 -0.1
547,299 - MMP_RS02875 0.22 +1.9
547,341 + MMP_RS02875 0.30 -0.5
547,363 + MMP_RS02875 0.35 -0.0
547,367 - MMP_RS02875 0.35 -0.9
547,441 + MMP_RS02875 0.50 -0.1
547,454 + MMP_RS02875 0.52 +0.5
547,583 + MMP_RS02875 0.77 -0.2
547,628 - MMP_RS02875 0.86 -0.1
547,634 + MMP_RS02875 0.87 -0.5
547,634 + MMP_RS02875 0.87 -0.2
547,634 + MMP_RS02875 0.87 +0.1
547,635 - MMP_RS02875 0.87 -0.1
547,665 - -0.4
547,679 + -0.1
547,856 - MMP_RS02880 0.14 +0.1
547,920 - MMP_RS02880 0.20 -0.2
548,098 - MMP_RS02880 0.38 -0.1
548,099 + MMP_RS02880 0.38 -0.1
548,245 + MMP_RS02880 0.53 +0.1
548,246 - MMP_RS02880 0.53 -0.6
548,471 + MMP_RS02880 0.75 -0.4
548,501 - MMP_RS02880 0.78 -0.2
548,501 - MMP_RS02880 0.78 -0.6
548,501 - MMP_RS02880 0.78 +0.3
548,502 + MMP_RS02880 0.78 -0.5
548,555 - MMP_RS02880 0.83 -0.5
548,556 + MMP_RS02880 0.83 -0.5
548,556 + MMP_RS02880 0.83 +0.2
548,558 + MMP_RS02880 0.83 +0.2
548,596 - MMP_RS02880 0.87 -0.3
548,617 + MMP_RS02880 0.89 +0.2
548,665 + -0.2
548,718 + -0.6
548,718 + +0.9
548,737 - -0.3
548,738 + +0.0
548,757 - -0.3
548,758 + -0.0
548,761 - -0.0
548,762 + -0.5
548,762 + -0.1
548,786 - +0.1
548,876 + +0.4
549,091 - MMP_RS02885 0.18 +0.2
549,188 + MMP_RS02885 0.24 -0.1
549,203 - MMP_RS02885 0.24 +0.2
549,204 + MMP_RS02885 0.24 +0.8
549,204 + MMP_RS02885 0.24 +0.3
549,206 + MMP_RS02885 0.25 +0.2
549,224 - MMP_RS02885 0.26 +0.4
549,308 + MMP_RS02885 0.30 +0.0
549,328 - MMP_RS02885 0.31 +0.6
549,329 + MMP_RS02885 0.31 -0.8
549,357 + MMP_RS02885 0.33 -0.1
549,374 - MMP_RS02885 0.34 -0.0
549,689 + MMP_RS02885 0.51 +0.5
549,692 + MMP_RS02885 0.51 +0.1

Or see this region's nucleotide sequence